def __call__(self):
""" Main function of the script """
start_time = time()
print ("Start parsing files: {} chunks to be parsed".format(len(self.seq_R1)))
# For double indexing
if self.idx2:
self.double_index_parser()
# For simple indexing
else:
self.simple_index_parser()
# Flush remaining content in sample buffers
Sample.FLUSH_ALL()
# Write a report
print ("Generate_a csv report")
with open ("Quade_report.csv", "wb") as report:
report.write ("Program {}\tDate {}\n\n".format(self.VERSION,str(datetime.today())))
for descr, value in Sample.REPORT():
report.write ("{}\t{}\n".format(descr, value))
print ("Done in {}s".format(round(time()-start_time, 3)))
return(0)
