Example #1
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def region(geneid, genomeid):
    """
    Queries for the instances of geneid in genomeid.
    """
    results = sparql.find_regions(geneid, genomeid)
    return Response.default(results)
Example #2
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def gene(geneid):
    """
    Returns the metadata of a particular gene in json format.
    """
    return Response.default(sparql.get_gene(geneid))
Example #3
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def regions(genomeid):
    """
    Returns all the genes inside a particular genome
    """
    return Response.default(sparql.find_alleles(genomeid))
Example #4
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def vfs():
    """
    General query that returns all virulence factors.
    """
    return Response.default(sparql.get_all_genes("vf"))
Example #5
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def amrs():
    """
    General query that returns all antimicrobial resistance genes.
    """
    return Response.default(sparql.get_all_genes("amr"))
Example #6
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def region(geneid, genomeid):
    """
    Queries for the instances of geneid in genomeid.
    """
    results = (sparql.find_regions(geneid, genomeid))
    return Response.default(results)
Example #7
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def genes():
    """
    General query that returns all genes and their metadata.
    """
    return Response.default(sparql.get_all_genes())
Example #8
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def regions(genomeid):
    """
    Returns all the genes inside a particular genome
    """
    return Response.default(sparql.find_alleles(genomeid))
Example #9
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def gene(geneid):
    """
    Returns the metadata of a particular gene in json format.
    """
    return Response.default(sparql.get_gene(geneid))
Example #10
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def amrs():
    """
    General query that returns all antimicrobial resistance genes.
    """
    return Response.default(sparql.get_all_genes('amr'))
Example #11
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def vfs():
    """
    General query that returns all virulence factors.
    """
    return Response.default(sparql.get_all_genes('vf'))
Example #12
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def genes():
    """
    General query that returns all genes and their metadata.
    """
    return Response.default(sparql.get_all_genes())