Python data_path Examples

Example #1

 def setUp(self):
     self.infile = data_path('test.sff')
     with open(data_path('test.raw')) as fp:
         self.expected = list(fp)[1:]

Example #2

File: test_clean.py Project: fhcrc/ampliconnoise

 def setUp(self):
     self.fa_path = data_path("test.fa")
     self.dat_path = data_path("test.dat")
     self.raw_path = data_path("test.raw")

Example #3

File: test_anoiseio.py Project: fhcrc/ampliconnoise

 def setUp(self):
     self.pnoise_fp = open(data_path('test-pnoise.mapping'))
     self.snoise_fp = open(data_path('test-snoise.mapping'))

Example #4

File: test_clean.py Project: fhcrc/ampliconnoise

 def setUp(self):
     self.fa_path = data_path('test.fa')
     self.dat_path = data_path('test.dat')
     self.raw_path = data_path('test.raw')

Example #5

File: test_pyronoise.py Project: fhcrc/ampliconnoise

 def setUp(self):
     self.sff_path = data_path('test.sff')
     self.expected_path = data_path('test-pnoise_cd.fa',)
     self.mapping_path = data_path('test-pnoise.mapping')
     with open(self.expected_path) as fp:
         self.expected = list(fp)

Example #6

File: test_sff2raw.py Project: fhcrc/ampliconnoise

 def setUp(self):
     self.infile = data_path('test.sff')
     with open(data_path('test.raw')) as fp:
         self.expected = list(fp)[1:]

Example #7

File: test_anoiseio.py Project: fhcrc/ampliconnoise

 def setUp(self):
     self.pnoise_fp = open(data_path('test-pnoise.mapping'))
     self.snoise_fp = open(data_path('test-snoise.mapping'))