Python to_rec Examples

Example #1

def postprocess_alignment_to_rec(*args):
    default_keys = [
        "config__algorithm__coverage_interval",
        "config__algorithm__seq2c_bed_ready", "config__algorithm__coverage",
        "config__algorithm__coverage_merged",
        "config__algorithm__coverage_orig",
        "config__algorithm__variant_regions",
        "config__algorithm__variant_regions_merged",
        "config__algorithm__variant_regions_orig"
    ]
    return cwlutils.to_rec(*args, default_keys=default_keys)

Example #2

def process_alignment_to_rec(*args):
    return cwlutils.to_rec(*args)

Example #3

def prep_samples_to_rec(*args):
    return cwlutils.to_rec(*args)

Example #4

def hla_to_rec(*args):
    return cwlutils.to_rec(*args)

Example #5

File: multitasks.py Project: biocyberman/bcbio-nextgen

def prep_samples_to_rec(*args):
    return cwlutils.to_rec(*args)

Example #6

File: multitasks.py Project: biocyberman/bcbio-nextgen

def postprocess_alignment_to_rec(*args):
    default_keys = ["config__algorithm__coverage_interval", "config__algorithm__seq2c_bed_ready",
                    "config__algorithm__coverage", "config__algorithm__coverage_merged",
                    "config__algorithm__coverage_orig", "config__algorithm__variant_regions",
                    "config__algorithm__variant_regions_merged", "config__algorithm__variant_regions_orig"]
    return cwlutils.to_rec(*args, default_keys=default_keys)

Example #7

File: multitasks.py Project: biocyberman/bcbio-nextgen

def process_alignment_to_rec(*args):
    return cwlutils.to_rec(*args)

Example #8

File: multitasks.py Project: chapmanb/bcbio-nextgen

def hla_to_rec(*args):
    return cwlutils.to_rec(*args)