コード例 #1
0
def postprocess_alignment_to_rec(*args):
    default_keys = [
        "config__algorithm__coverage_interval",
        "config__algorithm__seq2c_bed_ready", "config__algorithm__coverage",
        "config__algorithm__coverage_merged",
        "config__algorithm__coverage_orig",
        "config__algorithm__variant_regions",
        "config__algorithm__variant_regions_merged",
        "config__algorithm__variant_regions_orig"
    ]
    return cwlutils.to_rec(*args, default_keys=default_keys)
コード例 #2
0
def process_alignment_to_rec(*args):
    return cwlutils.to_rec(*args)
コード例 #3
0
def prep_samples_to_rec(*args):
    return cwlutils.to_rec(*args)
コード例 #4
0
def hla_to_rec(*args):
    return cwlutils.to_rec(*args)
コード例 #5
0
def prep_samples_to_rec(*args):
    return cwlutils.to_rec(*args)
コード例 #6
0
def postprocess_alignment_to_rec(*args):
    default_keys = ["config__algorithm__coverage_interval", "config__algorithm__seq2c_bed_ready",
                    "config__algorithm__coverage", "config__algorithm__coverage_merged",
                    "config__algorithm__coverage_orig", "config__algorithm__variant_regions",
                    "config__algorithm__variant_regions_merged", "config__algorithm__variant_regions_orig"]
    return cwlutils.to_rec(*args, default_keys=default_keys)
コード例 #7
0
def process_alignment_to_rec(*args):
    return cwlutils.to_rec(*args)
コード例 #8
0
ファイル: multitasks.py プロジェクト: chapmanb/bcbio-nextgen 
def hla_to_rec(*args):
    return cwlutils.to_rec(*args)