def test_one_approximate_match(self): occurrences = dnaseq.naive_approximate("ACTTACTTGATAAAGT", "ACTTTA", 2) self.assertEqual([0, 4], occurrences)
def test_no_match(self): occurrences = dnaseq.naive_approximate("AAAAAA", "CCC", 2) self.assertEqual([], occurrences)
def test_one_match(self): occurrences = dnaseq.naive_approximate("CCATCC", "ATG", 2) self.assertEqual([2], occurrences)
def question_06(): occurrences = dnaseq.naive_approximate(lambda_virus, "AGGAGGTT", 2) print "question_06: %i" % occurrences[0]
def question_05(): occurrences = dnaseq.naive_approximate(lambda_virus, "TTCAAGCC", 2) print "question_05: %i" % len(occurrences)