def test___samtools_third_real_record(self): samtools_variant_record = retrieve_samtools_entry_from_test_vcf(2) samtools_vcf = VCFFactory.create_Samtools_VCF_from_VariantRecord_and_Sample(samtools_variant_record, "sample_name") assert samtools_vcf.genotype == 1 assert math.isclose(samtools_vcf.genotype_confidence, 0.0, abs_tol=0.0001) assert samtools_vcf.svtype == "SNP" assert samtools_vcf.coverage == 82
def test___samtools_fails_with_genotype_2(self): samtools_variant_record = retrieve_samtools_entry_from_test_vcf(4) samtools_vcf = VCFFactory.create_Samtools_VCF_from_VariantRecord_and_Sample(samtools_variant_record, "sample_name")