def test_ProcStreamlines_outputs(): output_map = dict(proc=dict(), ) outputs = ProcStreamlines.output_spec() for key, metadata in output_map.items(): for metakey, value in metadata.items(): yield assert_equal, getattr(outputs.traits()[key], metakey), value
def test_ProcStreamlines_outputs(): output_map = dict( outputroot_files=dict(), proc=dict(), ) outputs = ProcStreamlines.output_spec() for key, metadata in output_map.items(): for metakey, value in metadata.items(): yield assert_equal, getattr(outputs.traits()[key], metakey), value
def test_ProcStreamlines_inputs(): input_map = dict(allowmultitargets=dict(argstr='-allowmultitargets', ), args=dict(argstr='%s', ), datadims=dict(argstr='-datadims %s', units='voxels', ), directional=dict(argstr='-directional %s', units='NA', ), discardloops=dict(argstr='-discardloops', ), endpointfile=dict(argstr='-endpointfile %s', ), environ=dict(nohash=True, usedefault=True, ), exclusionfile=dict(argstr='-exclusionfile %s', ), gzip=dict(argstr='-gzip', ), ignore_exception=dict(nohash=True, usedefault=True, ), in_file=dict(argstr='-inputfile %s', mandatory=True, position=1, ), inputmodel=dict(argstr='-inputmodel %s', usedefault=True, ), iterations=dict(argstr='-iterations %d', units='NA', ), maxtractlength=dict(argstr='-maxtractlength %d', units='mm', ), maxtractpoints=dict(argstr='-maxtractpoints %d', units='NA', ), mintractlength=dict(argstr='-mintractlength %d', units='mm', ), mintractpoints=dict(argstr='-mintractpoints %d', units='NA', ), noresample=dict(argstr='-noresample', ), out_file=dict(argstr='> %s', genfile=True, position=-1, ), outputacm=dict(argstr='-outputacm', requires=['outputroot', 'seedfile'], ), outputcbs=dict(argstr='-outputcbs', requires=['outputroot', 'targetfile', 'seedfile'], ), outputcp=dict(argstr='-outputcp', requires=['outputroot', 'seedfile'], ), outputroot=dict(argstr='-outputroot %s', ), outputsc=dict(argstr='-outputsc', requires=['outputroot', 'seedfile'], ), outputtracts=dict(argstr='-outputtracts', ), regionindex=dict(argstr='-regionindex %d', units='mm', ), resamplestepsize=dict(argstr='-resamplestepsize %d', units='NA', ), seedfile=dict(argstr='-seedfile %s', ), seedpointmm=dict(argstr='-seedpointmm %s', units='mm', ), seedpointvox=dict(argstr='-seedpointvox %s', units='voxels', ), targetfile=dict(argstr='-targetfile %s', ), terminal_output=dict(mandatory=True, nohash=True, ), truncateinexclusion=dict(argstr='-truncateinexclusion', ), truncateloops=dict(argstr='-truncateloops', ), voxeldims=dict(argstr='-voxeldims %s', units='mm', ), waypointfile=dict(argstr='-waypointfile %s', ), ) inputs = ProcStreamlines.input_spec() for key, metadata in input_map.items(): for metakey, value in metadata.items(): yield assert_equal, getattr(inputs.traits()[key], metakey), value
def test_ProcStreamlines_inputs(): input_map = dict( allowmultitargets=dict(argstr='-allowmultitargets', ), args=dict(argstr='%s', ), datadims=dict( argstr='-datadims %s', units='voxels', ), directional=dict( argstr='-directional %s', units='NA', ), discardloops=dict(argstr='-discardloops', ), endpointfile=dict(argstr='-endpointfile %s', ), environ=dict( nohash=True, usedefault=True, ), exclusionfile=dict(argstr='-exclusionfile %s', ), gzip=dict(argstr='-gzip', ), ignore_exception=dict( nohash=True, usedefault=True, ), in_file=dict( argstr='-inputfile %s', mandatory=True, position=1, ), inputmodel=dict( argstr='-inputmodel %s', usedefault=True, ), iterations=dict( argstr='-iterations %d', units='NA', ), maxtractlength=dict( argstr='-maxtractlength %d', units='mm', ), maxtractpoints=dict( argstr='-maxtractpoints %d', units='NA', ), mintractlength=dict( argstr='-mintractlength %d', units='mm', ), mintractpoints=dict( argstr='-mintractpoints %d', units='NA', ), noresample=dict(argstr='-noresample', ), out_file=dict( argstr='> %s', genfile=True, position=-1, ), outputacm=dict( argstr='-outputacm', requires=['outputroot', 'seedfile'], ), outputcbs=dict( argstr='-outputcbs', requires=['outputroot', 'targetfile', 'seedfile'], ), outputcp=dict( argstr='-outputcp', requires=['outputroot', 'seedfile'], ), outputroot=dict(argstr='-outputroot %s', ), outputsc=dict( argstr='-outputsc', requires=['outputroot', 'seedfile'], ), outputtracts=dict(argstr='-outputtracts', ), regionindex=dict( argstr='-regionindex %d', units='mm', ), resamplestepsize=dict( argstr='-resamplestepsize %d', units='NA', ), seedfile=dict(argstr='-seedfile %s', ), seedpointmm=dict( argstr='-seedpointmm %s', units='mm', ), seedpointvox=dict( argstr='-seedpointvox %s', units='voxels', ), targetfile=dict(argstr='-targetfile %s', ), terminal_output=dict(nohash=True, ), truncateinexclusion=dict(argstr='-truncateinexclusion', ), truncateloops=dict(argstr='-truncateloops', ), voxeldims=dict( argstr='-voxeldims %s', units='mm', ), waypointfile=dict(argstr='-waypointfile %s', ), ) inputs = ProcStreamlines.input_spec() for key, metadata in input_map.items(): for metakey, value in metadata.items(): yield assert_equal, getattr(inputs.traits()[key], metakey), value