Python Bedpe.adjust_by_ciend Examples

Example #1

File: bedpe_tests.py Project: mkiwala/svtools

    def test_adjust_by_ciend(self):
        entry1 = [ '1', '200', '300', '2', '300', '400', '777_1', '57', '+', '-', 'BND', 'PASS', 'SVTYPE=BND;AF=0.2', 'SVTYPE=BND;AF=0.2' ]
        b1 = Bedpe(entry1)
        self.assertEqual(b1.b2, 301)
        b1.o2 = '+'
        b1.adjust_by_ciend()
        self.assertEqual(b1.b2, 300)

        b1.misc[0] = 'SVTYPE=BND;AF=0.2;CIEND=-2,3'
        b1.adjust_by_ciend()
        self.assertEqual(b1.b2, 302)
        b1.o2 = '-'
        b1.adjust_by_ciend()
        self.assertEqual(b1.b2, 303)