def test_set_info(self):
entry1 = [ '1', '200', '300', '2', '300', '400', '777_1', '57', '+', '-', 'BND', 'PASS', '.', '.', '.', '.', '.', '.', 'MISSING', 'SVTYPE=BND' ]
b1 = Bedpe(entry1)
b1.set_info('AF', '0.2')
self.assertEqual(b1.info, 'SVTYPE=BND;AF=0.2')
entry2 = [ '1', '200', '300', '2', '300', '400', '777_1', '57', '+', '-', 'BND', 'PASS', '.', '.', '.', '.', '.', '.', 'SVTYPE=BND', 'MISSING' ]
b2 = Bedpe(entry2)
b2.set_info('AF', '0.2')
self.assertEqual(b2.info, 'SVTYPE=BND;AF=0.2')
entry3 = [ '1', '200', '300', '2', '300', '400', '777_1', '57', '+', '-', 'BND', 'PASS', '.', '.', '.', '.', '.', '.', 'SVTYPE=BND', 'SECONDARY' ]
b3 = Bedpe(entry3)
b3.set_info('AF', '0.2')
self.assertEqual(b3.info1, 'SVTYPE=BND;AF=0.2')
self.assertEqual(b3.info2, 'SECONDARY;AF=0.2')
entry4 = [ '1', '200', '300', '2', '300', '400', '777_1', '57', '+', '-', 'BND', 'PASS', '.', '.', '.', '.', '.', '.', 'SVTYPE=BND', '.' ]
b4 = Bedpe(entry4)
b4.set_info('PRESENT', None)
self.assertEqual(b4.info, 'SVTYPE=BND;PRESENT')
self.assertEqual(b4.info2, '.')
def test_set_info(self):
entry1 = [
'1', '200', '300', '2', '300', '400', '777_1', '57', '+', '-',
'BND', 'PASS', '.', '.', '.', '.', '.', '.', 'MISSING',
'SVTYPE=BND'
]
b1 = Bedpe(entry1)
b1.set_info('AF', '0.2')
self.assertEqual(b1.info, 'SVTYPE=BND;AF=0.2')
entry2 = [
'1', '200', '300', '2', '300', '400', '777_1', '57', '+', '-',
'BND', 'PASS', '.', '.', '.', '.', '.', '.', 'SVTYPE=BND',
'MISSING'
]
b2 = Bedpe(entry2)
b2.set_info('AF', '0.2')
self.assertEqual(b2.info, 'SVTYPE=BND;AF=0.2')
entry3 = [
'1', '200', '300', '2', '300', '400', '777_1', '57', '+', '-',
'BND', 'PASS', '.', '.', '.', '.', '.', '.', 'SVTYPE=BND',
'SECONDARY'
]
b3 = Bedpe(entry3)
b3.set_info('AF', '0.2')
self.assertEqual(b3.info1, 'SVTYPE=BND;AF=0.2')
self.assertEqual(b3.info2, 'SECONDARY;AF=0.2')
entry4 = [
'1', '200', '300', '2', '300', '400', '777_1', '57', '+', '-',
'BND', 'PASS', '.', '.', '.', '.', '.', '.', 'SVTYPE=BND', '.'
]
b4 = Bedpe(entry4)
b4.set_info('PRESENT', None)
self.assertEqual(b4.info, 'SVTYPE=BND;PRESENT')
self.assertEqual(b4.info2, '.')
