def test_adjust_by_cipos(self):
entry1 = [ '1', '200', '300', '2', '300', '400', '777_1', '57', '+', '-', 'BND', 'PASS', 'SVTYPE=BND;AF=0.2', 'SVTYPE=BND;AF=0.2' ]
b1 = Bedpe(entry1)
self.assertEqual(b1.b1, 200)
b1.o1 = '-'
b1.adjust_by_cipos()
self.assertEqual(b1.b1, 201)
b1.misc[0] = 'SVTYPE=BND;AF=0.2;CIPOS=-2,3'
b1.adjust_by_cipos()
self.assertEqual(b1.b1, 203)
b1.o1 = '+'
b1.adjust_by_cipos()
self.assertEqual(b1.b1, 202)
