def test_assemble(self):
from assembler import Assembler
assbl = Assembler(sequences, identifiers)
assbl._find_matching_pairs = MagicMock(return_value=(map_top_bottom,
map_bottom_top))
assbl._determine_order = MagicMock(return_value=order)
self.assertEqual(assbl.assemble(), assembled_seq)
def test_determine_order(self):
from assembler import Assembler
assbl = Assembler(sequences, identifiers)
c = map_top_bottom
d = map_bottom_top
o = assbl._determine_order(c, d)
self.assertEqual(o, order)
def test_determine_order(self):
from assembler import Assembler
assbl = Assembler(sequences)
c = top_ranges_dict
d = bottom_ranges_dict
a = top_seq_dict
b = bottom_seq_dict
o = assbl._determine_order(a,b,c,d)
self.assertEqual(o, order)
def test_assemble(self):
from assembler import Assembler
assbl = Assembler(sequences)
assbl._find_matching_pairs = MagicMock(return_value=(top_seq_dict, bottom_seq_dict, top_ranges_dict, bottom_ranges_dict))
assbl._determine_order = MagicMock(return_value=order)
self.assertEqual(assbl.assemble(), assembled_seq)
