def testBestHsp(self):
"""
The bestHsp function must return the HSP with the best score for all
the HSPs for all the alignments matching a title.
"""
hsp1 = HSP(7)
hsp2 = HSP(15)
hsp3 = HSP(21)
titleAlignments = TitleAlignments('subject title', 55)
read = Read('id1', 'AAA')
titleAlignment = TitleAlignment(read, [hsp1, hsp2])
titleAlignments.addAlignment(titleAlignment)
read = Read('id2', 'AAA')
titleAlignment = TitleAlignment(read, [hsp3])
titleAlignments.addAlignment(titleAlignment)
self.assertEqual(hsp3, titleAlignments.bestHsp())
def testBestHsp(self):
"""
The bestHsp function must return the HSP with the best score for the
HSPs all the alignments matching a title.
"""
hsp1 = LSP(7)
hsp2 = LSP(15)
hsp3 = LSP(21)
titleAlignments = TitleAlignments('subject title', 55)
read = Read('id1', 'AAA')
titleAlignment = TitleAlignment(read, [hsp1, hsp2])
titleAlignments.addAlignment(titleAlignment)
read = Read('id2', 'AAA')
titleAlignment = TitleAlignment(read, [hsp3])
titleAlignments.addAlignment(titleAlignment)
self.assertEqual(hsp1, titleAlignments.bestHsp())
def testBestHsp(self):
"""
The bestHsp function must return the HSP with the best score for all
the HSPs for all the alignments matching a title.
"""
hsp1 = HSP(7)
hsp2 = HSP(15)
hsp3 = HSP(21)
titleAlignments = TitleAlignments("subject title", 55)
read = Read("id1", "AAA")
titleAlignment = TitleAlignment(read, [hsp1, hsp2])
titleAlignments.addAlignment(titleAlignment)
read = Read("id2", "AAA")
titleAlignment = TitleAlignment(read, [hsp3])
titleAlignments.addAlignment(titleAlignment)
self.assertEqual(hsp3, titleAlignments.bestHsp())
