def testMedianScoreOfTwo(self):
"""
The medianScore function must return the median score for the HSPs in
all the alignments matching a title when given 2 scores.
"""
hsp1 = HSP(7)
hsp2 = HSP(15)
titleAlignments = TitleAlignments('subject title', 55)
read = Read('id1', 'AAA')
titleAlignment = TitleAlignment(read, [hsp1, hsp2])
titleAlignments.addAlignment(titleAlignment)
self.assertEqual(11, titleAlignments.medianScore())
def testMedianScoreOfTwo(self):
"""
The medianScore function must return the median score for the HSPs in
all the alignments matching a title when given 2 scores.
"""
hsp1 = HSP(7)
hsp2 = HSP(15)
titleAlignments = TitleAlignments('subject title', 55)
read = Read('id1', 'AAA')
titleAlignment = TitleAlignment(read, [hsp1, hsp2])
titleAlignments.addAlignment(titleAlignment)
self.assertEqual(11, titleAlignments.medianScore())
def testMedianScoreOfThree(self):
"""
The medianScore function must return the median score for the HSPs in
all the alignments matching a title when given 3 scores.
"""
hsp1 = HSP(7)
hsp2 = HSP(15)
hsp3 = HSP(21)
titleAlignments = TitleAlignments("subject title", 55)
read = Read("id1", "AAA")
titleAlignment = TitleAlignment(read, [hsp1, hsp2])
titleAlignments.addAlignment(titleAlignment)
read = Read("id2", "AAA")
titleAlignment = TitleAlignment(read, [hsp3])
titleAlignments.addAlignment(titleAlignment)
self.assertEqual(15, titleAlignments.medianScore())
