def testReadIdsEmpty(self):
"""
The readIds function must return the empty set if no reads matched a
title.
"""
titleAlignments = TitleAlignments('subject title', 55)
self.assertEqual(0, len(titleAlignments.readIds()))
def testReadIdsEmpty(self):
"""
The readIds function must return the empty set if no reads matched a
title.
"""
titleAlignments = TitleAlignments('subject title', 55)
self.assertEqual(0, len(titleAlignments.readIds()))
def testReadIds(self):
"""
The readIds function must return the set of read ids for the alignments
matching a title.
"""
hsp1 = LSP(7)
hsp2 = LSP(15)
hsp3 = LSP(21)
titleAlignments = TitleAlignments('subject title', 55)
read = Read('id1', 'AAA')
titleAlignment = TitleAlignment(read, [hsp1, hsp2])
titleAlignments.addAlignment(titleAlignment)
read = Read('id2', 'AAA')
titleAlignment = TitleAlignment(read, [hsp3])
titleAlignments.addAlignment(titleAlignment)
self.assertEqual(set(['id1', 'id2']), titleAlignments.readIds())
def testReadIds(self):
"""
The readIds function must return the set of read ids for the alignments
matching a title.
"""
hsp1 = LSP(7)
hsp2 = LSP(15)
hsp3 = LSP(21)
titleAlignments = TitleAlignments('subject title', 55)
read = Read('id1', 'AAA')
titleAlignment = TitleAlignment(read, [hsp1, hsp2])
titleAlignments.addAlignment(titleAlignment)
read = Read('id2', 'AAA')
titleAlignment = TitleAlignment(read, [hsp3])
titleAlignments.addAlignment(titleAlignment)
self.assertEqual(set(['id1', 'id2']), titleAlignments.readIds())
