def finish(self): # Once executed, alignment is converted into relaxed # interleaved phylip format. final_job = self.jobs[2] alg = SeqGroup(os.path.join(final_job.jobdir, "alg.fasta")) alg.write(outfile=self.alg_fasta_file, format="fasta") alg.write(outfile=self.alg_phylip_file, format="iphylip_relaxed") AlgTask.finish(self)