def finish(self):
# Once executed, alignment is converted into relaxed
# interleaved phylip format.
final_job = self.jobs[2]
alg = SeqGroup(os.path.join(final_job.jobdir, "alg.fasta"))
alg.write(outfile=self.alg_fasta_file, format="fasta")
alg.write(outfile=self.alg_phylip_file, format="iphylip_relaxed")
AlgTask.finish(self)
def finish(self):
# Once executed, alignment is converted into relaxed
# interleaved phylip format.
final_job = self.jobs[2]
alg = SeqGroup(os.path.join(final_job.jobdir, "alg.fasta"))
alg.write(outfile=self.alg_fasta_file, format="fasta")
alg.write(outfile=self.alg_phylip_file, format="iphylip_relaxed")
AlgTask.finish(self)
