Python AlgTask.finishの例

コード例 #1

ファイル: uhire.py プロジェクト: jerryatmda/ete

 def finish(self):
     # Once executed, alignment is converted into relaxed
     # interleaved phylip format.
     final_job = self.jobs[2]
     alg = SeqGroup(os.path.join(final_job.jobdir, "alg.fasta"))
     alg.write(outfile=self.alg_fasta_file, format="fasta")
     alg.write(outfile=self.alg_phylip_file, format="iphylip_relaxed")
     AlgTask.finish(self)

コード例 #2

ファイル: uhire.py プロジェクト: F4L2/devoirs

 def finish(self):
     # Once executed, alignment is converted into relaxed
     # interleaved phylip format.
     final_job = self.jobs[2]
     alg = SeqGroup(os.path.join(final_job.jobdir, "alg.fasta"))
     alg.write(outfile=self.alg_fasta_file, format="fasta")
     alg.write(outfile=self.alg_phylip_file, format="iphylip_relaxed")
     AlgTask.finish(self)