Python files_have_min_reads Exemples

Exemple #1

 def validate_input_files(self):
     if not count.files_have_min_reads(self.input_files_local[0][0:2], 1):
         self.input_file_error = InputFileErrors.INSUFFICIENT_READS

Exemple #2

Fichier : run_idseq_dedup.py Projet : chanzuckerberg/idseq-workflows

 def validate_input_files(self):
     if not count.files_have_min_reads(self.input_files_local[0], 2):
         raise InsufficientReadsError(
             "Insufficient reads before idseq-dedup")

Exemple #3

 def validate_input_files(self):
     if not count.files_have_min_reads(self.input_files_local[0][0:2], 1):
         raise InsufficientReadsError("Insufficient reads")

Exemple #4

Fichier : run_alignment_remotely.py Projet : eamanu/idseq-dag

 def validate_input_files(self):
     # first two files are gsnap_filter_1.fa and gsnap_filter_2.fa
     if not count.files_have_min_reads(self.input_files_local[0][:-1], 1):
         self.input_file_error = InputFileErrors.INSUFFICIENT_READS

Exemple #5

 def validate_input_files(self):
     # first two files are gsnap_filter_1.fa and gsnap_filter_2.fa
     if not count.files_have_min_reads(self.input_files_local[0][:-1], 1):
         raise InsufficientReadsError("Insufficient reads")

Exemple #6

Fichier : run_bowtie2.py Projet : jonason91/idseq-workflows

 def validate_input_files(self):
     if not count.files_have_min_reads(self.input_fas(), 1):
         raise InsufficientReadsError("Insufficient reads before bowtie2")