def testMapSplicedRead4(self): self.assertEqual(hw.mapSplicedRead("GTGGCCGGTAAACATAGATGTCTGGGGAACTTACCCTAAC", reads.lacDNA, 15), [417, 437, 9042, 9062] )
def testMapSplicedRead2(self): self.assertEqual(hw.mapSplicedRead("AACC", "GGAAGGCC",2), [2, 4, 6, 8])
def testMapSplicedRead3(self): self.assertEqual(hw.mapSplicedRead("CCAA", "GGAAGGCC",2), 'NOT FOUND')
def testMapSplicedRead1(self): self.assertEqual(hw.mapSplicedRead("ATT", "ATAT", 3), 'NOT FOUND')
def testMapSplicedRead4(self): self.assertEqual( hw.mapSplicedRead("GTGGCCGGTAAACATAGATGTCTGGGGAACTTACCCTAAC", reads.lacDNA, 15), [417, 437, 9042, 9062])
def testMapSplicedRead3(self): self.assertEqual(hw.mapSplicedRead("CCAA", "GGAAGGCC", 2), 'NOT FOUND')
def testMapSplicedRead2(self): self.assertEqual(hw.mapSplicedRead("AACC", "GGAAGGCC", 2), [2, 4, 6, 8])