def test_nonzero_neurite_radii_threshold(): nrn = NEURONS['Neuron.swc'] ids = check_morph.nonzero_neurite_radii(nrn) nt.ok_(len(ids) == 0) ids = check_morph.nonzero_neurite_radii(nrn, threshold=0.25) nt.assert_equal(len(ids), 118)
def test_nonzero_neurite_radii_threshold(): nrn = NEURONS['Neuron.swc'] ids = check.nonzero_neurite_radii(nrn) nt.ok_(len(ids) == 0) ids = check.nonzero_neurite_radii(nrn, threshold=0.25) nt.assert_equal(len(ids), 118)
def test_nonzero_neurite_radii_good_data(): files = ['Neuron.swc', 'Single_apical.swc', 'Single_basal.swc', 'Single_axon.swc', 'Neuron_2_branch.h5', ] for n in _pick(files): ids = check_morph.nonzero_neurite_radii(n) nt.ok_(len(ids) == 0)
def test_nonzero_neurite_radii_good_data(): files = [ 'Neuron.swc', 'Single_apical.swc', 'Single_basal.swc', 'Single_axon.swc', 'Neuron_2_branch.h5', ] for n in _pick(files): ids = check.nonzero_neurite_radii(n) nt.ok_(len(ids) == 0)
def test_nonzero_neurite_radii_bad_data(): nrn = NEURONS['Neuron_zero_radius.swc'] ids = check_morph.nonzero_neurite_radii(nrn) nt.ok_(ids == [194, 210, 246, 304, 493])
def test_nonzero_neurite_radii_bad_data(): nrn = NEURONS['Neuron_zero_radius.swc'] ids = check.nonzero_neurite_radii(nrn) nt.ok_(ids == [194, 210, 246, 304, 493])