def test_nonzero_neurite_radii_threshold():
nrn = NEURONS['Neuron.swc']
ids = check_morph.nonzero_neurite_radii(nrn)
nt.ok_(len(ids) == 0)
ids = check_morph.nonzero_neurite_radii(nrn, threshold=0.25)
nt.assert_equal(len(ids), 118)
def test_nonzero_neurite_radii_threshold():
nrn = NEURONS['Neuron.swc']
ids = check.nonzero_neurite_radii(nrn)
nt.ok_(len(ids) == 0)
ids = check.nonzero_neurite_radii(nrn, threshold=0.25)
nt.assert_equal(len(ids), 118)
def test_nonzero_neurite_radii_good_data():
files = ['Neuron.swc',
'Single_apical.swc',
'Single_basal.swc',
'Single_axon.swc',
'Neuron_2_branch.h5',
]
for n in _pick(files):
ids = check_morph.nonzero_neurite_radii(n)
nt.ok_(len(ids) == 0)
def test_nonzero_neurite_radii_good_data():
files = [
'Neuron.swc',
'Single_apical.swc',
'Single_basal.swc',
'Single_axon.swc',
'Neuron_2_branch.h5',
]
for n in _pick(files):
ids = check.nonzero_neurite_radii(n)
nt.ok_(len(ids) == 0)
def test_nonzero_neurite_radii_bad_data():
nrn = NEURONS['Neuron_zero_radius.swc']
ids = check_morph.nonzero_neurite_radii(nrn)
nt.ok_(ids == [194, 210, 246, 304, 493])
def test_nonzero_neurite_radii_bad_data():
nrn = NEURONS['Neuron_zero_radius.swc']
ids = check.nonzero_neurite_radii(nrn)
nt.ok_(ids == [194, 210, 246, 304, 493])
