Python run_salmon Exemples

Exemple #1

Fichier : salmon_barts_multilane_pe.py Projet : gaberosser/qmul-bioinf

#!/usr/bin/env python
import os
import argparse
import sys
import math

# add root of project dir to the path
sys.path.append(os.path.dirname(__file__) + '/../../')
from pyscript import salmon

if __name__ == "__main__":
    salmon.run_salmon("pe_multilane_barts_bash")

Exemple #2

Fichier : salmon_illumina_multilane.py Projet : gaberosser/qmul-bioinf

#!/usr/bin/env python
import os
import argparse
import sys
import math

# add root of project dir to the path
sys.path.append(os.path.dirname(__file__) + '/../../')
from pyscript import salmon

if __name__ == "__main__":
    salmon.run_salmon("pe_multilane_apocrita")

Exemple #3

#!/usr/bin/env python
import os
import argparse
import sys
import math

# add root of project dir to the path
sys.path.append(os.path.dirname(__file__) + '/../../')
from pyscript import salmon


if __name__ == "__main__":
    salmon.run_salmon('pe_multilane_encode_apocrita')

Exemple #4

#!/usr/bin/env python
import os
import argparse
import sys
import math

# add root of project dir to the path
sys.path.append(os.path.dirname(__file__) + '/../../')
from pyscript import salmon

if __name__ == "__main__":
    salmon.run_salmon("se_apocrita")

Exemple #5

#!/usr/bin/env python
import os
import argparse
import sys
import math

# add root of project dir to the path
sys.path.append(os.path.dirname(__file__) + '/../../')
from pyscript import salmon

if __name__ == "__main__":
    salmon.run_salmon("pe_bash")

Exemple #6

Fichier : salmon_se.py Projet : gaberosser/qmul-bioinf

#!/usr/bin/env python
import os
import argparse
import sys
import math

# add root of project dir to the path
sys.path.append(os.path.dirname(__file__) + '/../../')
from pyscript import salmon


if __name__ == "__main__":
    salmon.run_salmon("se_bash")