Python run_salmon 예제들

예제 #1

파일: salmon_barts_multilane_pe.py 프로젝트: gaberosser/qmul-bioinf

#!/usr/bin/env python
import os
import argparse
import sys
import math

# add root of project dir to the path
sys.path.append(os.path.dirname(__file__) + '/../../')
from pyscript import salmon

if __name__ == "__main__":
    salmon.run_salmon("pe_multilane_barts_bash")

예제 #2

파일: salmon_illumina_multilane.py 프로젝트: gaberosser/qmul-bioinf

#!/usr/bin/env python
import os
import argparse
import sys
import math

# add root of project dir to the path
sys.path.append(os.path.dirname(__file__) + '/../../')
from pyscript import salmon

if __name__ == "__main__":
    salmon.run_salmon("pe_multilane_apocrita")

예제 #3

#!/usr/bin/env python
import os
import argparse
import sys
import math

# add root of project dir to the path
sys.path.append(os.path.dirname(__file__) + '/../../')
from pyscript import salmon


if __name__ == "__main__":
    salmon.run_salmon('pe_multilane_encode_apocrita')

예제 #4

#!/usr/bin/env python
import os
import argparse
import sys
import math

# add root of project dir to the path
sys.path.append(os.path.dirname(__file__) + '/../../')
from pyscript import salmon

if __name__ == "__main__":
    salmon.run_salmon("se_apocrita")

예제 #5

#!/usr/bin/env python
import os
import argparse
import sys
import math

# add root of project dir to the path
sys.path.append(os.path.dirname(__file__) + '/../../')
from pyscript import salmon

if __name__ == "__main__":
    salmon.run_salmon("pe_bash")

예제 #6

파일: salmon_se.py 프로젝트: gaberosser/qmul-bioinf

#!/usr/bin/env python
import os
import argparse
import sys
import math

# add root of project dir to the path
sys.path.append(os.path.dirname(__file__) + '/../../')
from pyscript import salmon


if __name__ == "__main__":
    salmon.run_salmon("se_bash")