Python run_salmon示例

示例#1

文件： salmon_barts_multilane_pe.py 项目： gaberosser/qmul-bioinf

#!/usr/bin/env python
import os
import argparse
import sys
import math

# add root of project dir to the path
sys.path.append(os.path.dirname(__file__) + '/../../')
from pyscript import salmon

if __name__ == "__main__":
    salmon.run_salmon("pe_multilane_barts_bash")

示例#2

文件： salmon_illumina_multilane.py 项目： gaberosser/qmul-bioinf

#!/usr/bin/env python
import os
import argparse
import sys
import math

# add root of project dir to the path
sys.path.append(os.path.dirname(__file__) + '/../../')
from pyscript import salmon

if __name__ == "__main__":
    salmon.run_salmon("pe_multilane_apocrita")

示例#3

#!/usr/bin/env python
import os
import argparse
import sys
import math

# add root of project dir to the path
sys.path.append(os.path.dirname(__file__) + '/../../')
from pyscript import salmon


if __name__ == "__main__":
    salmon.run_salmon('pe_multilane_encode_apocrita')

示例#4

#!/usr/bin/env python
import os
import argparse
import sys
import math

# add root of project dir to the path
sys.path.append(os.path.dirname(__file__) + '/../../')
from pyscript import salmon

if __name__ == "__main__":
    salmon.run_salmon("se_apocrita")

示例#5

#!/usr/bin/env python
import os
import argparse
import sys
import math

# add root of project dir to the path
sys.path.append(os.path.dirname(__file__) + '/../../')
from pyscript import salmon

if __name__ == "__main__":
    salmon.run_salmon("pe_bash")

示例#6

文件： salmon_se.py 项目： gaberosser/qmul-bioinf

#!/usr/bin/env python
import os
import argparse
import sys
import math

# add root of project dir to the path
sys.path.append(os.path.dirname(__file__) + '/../../')
from pyscript import salmon


if __name__ == "__main__":
    salmon.run_salmon("se_bash")