def test_ccsset_from_bam(self): # DONE bug 28698 ds1 = ConsensusReadSet(upstreamData.getCCSBAM(), strict=False) fn = tempfile.NamedTemporaryFile(suffix=".consensusreadset.xml").name log.debug(fn) ds1.write(fn, validate=False) ds1.write(fn)
def test_ccsset_from_bam(self): # DONE bug 28698 ds1 = ConsensusReadSet(upstreamData.getCCSBAM(), strict=False) fn = tempfile.NamedTemporaryFile(suffix=".consensusreadset.xml").name log.debug(fn) ds1.write(fn, validate=False) ds1.write(fn)
def setup_class(self): self.f = BamReader(data.getCCSBAM())
def __init__(self): self.f = BamReader(data.getCCSBAM())
def setup_class(cls): cls.f = BamReader(data.getCCSBAM())