Esempi in Python per VcfPlugin._add_most_severe_consequence

Esempio n. 1

def test_add_most_severe(variant):
    plugin = VcfPlugin()

    variant.consequences = ['downstream_gene_variant', 'stop_gained']
    plugin._add_most_severe_consequence(variant)

    assert variant.most_severe_consequence == 'stop_gained'

Esempio n. 2

File: test_consequence_extras.py Progetto: J35P312/puzzle

def test_add_most_severe(variant):
    plugin = VcfPlugin()
    
    variant.consequences = ['downstream_gene_variant', 'stop_gained']
    plugin._add_most_severe_consequence(variant)
    
    assert variant.most_severe_consequence == 'stop_gained'

Esempio n. 3

def test_add_most_severe_no_info(variant):
    plugin = VcfPlugin()
    plugin._add_most_severe_consequence(variant)

    assert variant.most_severe_consequence == None

Esempio n. 4

File: test_consequence_extras.py Progetto: J35P312/puzzle

def test_add_most_severe_no_info(variant):
    plugin = VcfPlugin()
    plugin._add_most_severe_consequence(variant)
    
    assert variant.most_severe_consequence == None