Python VcfPlugin._add_most_severe_consequence示例

示例#1

def test_add_most_severe(variant):
    plugin = VcfPlugin()

    variant.consequences = ['downstream_gene_variant', 'stop_gained']
    plugin._add_most_severe_consequence(variant)

    assert variant.most_severe_consequence == 'stop_gained'

示例#2

文件： test_consequence_extras.py 项目： J35P312/puzzle

def test_add_most_severe(variant):
    plugin = VcfPlugin()
    
    variant.consequences = ['downstream_gene_variant', 'stop_gained']
    plugin._add_most_severe_consequence(variant)
    
    assert variant.most_severe_consequence == 'stop_gained'

示例#3

def test_add_most_severe_no_info(variant):
    plugin = VcfPlugin()
    plugin._add_most_severe_consequence(variant)

    assert variant.most_severe_consequence == None

示例#4

文件： test_consequence_extras.py 项目： J35P312/puzzle

def test_add_most_severe_no_info(variant):
    plugin = VcfPlugin()
    plugin._add_most_severe_consequence(variant)
    
    assert variant.most_severe_consequence == None