def test_add_most_severe(variant): plugin = VcfPlugin() variant.consequences = ['downstream_gene_variant', 'stop_gained'] plugin._add_most_severe_consequence(variant) assert variant.most_severe_consequence == 'stop_gained'
def test_add_most_severe(variant): plugin = VcfPlugin() variant.consequences = ['downstream_gene_variant', 'stop_gained'] plugin._add_most_severe_consequence(variant) assert variant.most_severe_consequence == 'stop_gained'
def test_add_most_severe_no_info(variant): plugin = VcfPlugin() plugin._add_most_severe_consequence(variant) assert variant.most_severe_consequence == None
def test_add_most_severe_no_info(variant): plugin = VcfPlugin() plugin._add_most_severe_consequence(variant) assert variant.most_severe_consequence == None