Python TogoWS._get_entry_dbsの例

コード例 #1

ファイル: test_TogoWS.py プロジェクト: biopython/biopython

 def test_databases(self):
     """Check supported databases"""
     dbs = set(TogoWS._get_entry_dbs())
     expected = set(
         [
             "nuccore",
             "nucest",
             "nucgss",
             "nucleotide",
             "protein",
             "gene",
             "homologene",
             "snp",
             "mesh",
             "pubmed",  # 'embl',
             "uniprot",
             "uniparc",
             "uniref100",
             "uniref90",
             "uniref50",
             "ddbj",
             "dad",
             "pdb",
             "compound",
             "drug",
             "enzyme",
             "genes",
             "glycan",
             "orthology",
             "reaction",
             "module",
             "pathway",
         ]
     )
     self.assertTrue(dbs.issuperset(expected), "Missing DB: %s" % ", ".join(sorted(expected.difference(dbs))))

コード例 #2

ファイル: test_TogoWS.py プロジェクト: stxinsite/biopython

 def test_databases(self):
     """Check supported databases."""
     dbs = set(TogoWS._get_entry_dbs())
     expected = {
         'nuccore',
         'nucest',
         'nucgss',
         'nucleotide',
         'protein',
         'gene',
         'homologene',
         'snp',
         'mesh',
         'pubmed',  # 'embl',
         'uniprot',
         'uniparc',
         'uniref100',
         'uniref90',
         'uniref50',
         'ddbj',
         'dad',
         'pdb',
         'compound',
         'drug',
         'enzyme',
         'genes',
         'glycan',
         'orthology',
         'reaction',
         'module',
         'pathway'
     }
     self.assertTrue(
         dbs.issuperset(expected),
         "Missing DB: %s" % ", ".join(sorted(expected.difference(dbs))))

コード例 #3

 def test_databases(self):
     """Check supported databases."""
     dbs = set(TogoWS._get_entry_dbs())
     expected = {
         "nuccore",
         "nucest",
         "nucgss",
         "nucleotide",
         "protein",
         "gene",
         "homologene",
         "snp",
         "mesh",
         "pubmed",  # 'embl',
         "uniprot",
         "uniparc",
         "uniref100",
         "uniref90",
         "uniref50",
         "ddbj",
         "dad",
         "pdb",
         "compound",
         "drug",
         "enzyme",
         "genes",
         "glycan",
         "orthology",
         "reaction",
         "module",
         "pathway"
     }
     self.assertTrue(
         dbs.issuperset(expected),
         "Missing DB: %s" % ", ".join(sorted(expected.difference(dbs))))

コード例 #4

 def test_databases(self):
     """Check supported databases"""
     dbs = set(TogoWS._get_entry_dbs())
     self.assert_(
         dbs.issuperset([
             'nuccore', 'nucest', 'nucgss', 'nucleotide', 'protein', 'gene',
             'omim', 'homologene', 'snp', 'mesh', 'pubmed', 'embl',
             'uniprot', 'uniparc', 'uniref100', 'uniref90', 'uniref50',
             'ddbj', 'dad', 'pdb', 'compound', 'drug', 'enzyme', 'genes',
             'glycan', 'orthology', 'reaction', 'module', 'pathway'
         ]), dbs)

コード例 #5

ファイル: test_TogoWS.py プロジェクト: OpenSourceCancer/biopython

 def test_databases(self):
     """Check supported databases"""
     dbs = set(TogoWS._get_entry_dbs())
     self.assert_(dbs.issuperset(['nuccore', 'nucest', 'nucgss',
                                  'nucleotide', 'protein', 'gene',
                                  'omim', 'homologene', 'snp',
                                  'mesh', 'pubmed', 'embl',
                                  'uniprot', 'uniparc', 'uniref100',
                                  'uniref90', 'uniref50', 'ddbj',
                                  'dad', 'pdb', 'compound', 'drug',
                                  'enzyme', 'genes', 'glycan',
                                  'orthology', 'reaction', 'module',
                                  'pathway']), dbs)

コード例 #6

ファイル: test_TogoWS.py プロジェクト: BIGLabHYU/biopython

 def test_databases(self):
     """Check supported databases"""
     dbs = set(TogoWS._get_entry_dbs())
     expected = set(['nuccore', 'nucest', 'nucgss',
                     'nucleotide', 'protein', 'gene',
                     'homologene', 'snp',
                     'mesh', 'pubmed',  # 'embl',
                     'uniprot', 'uniparc', 'uniref100',
                     'uniref90', 'uniref50', 'ddbj',
                     'dad', 'pdb', 'compound', 'drug',
                     'enzyme', 'genes', 'glycan',
                     'orthology', 'reaction', 'module',
                     'pathway'])
     self.assertTrue(dbs.issuperset(expected),
                     "Missing DB: %s" % ", ".join(sorted(expected.difference(dbs))))

コード例 #7

 def test_databases(self):
     """Check supported databases"""
     dbs = set(TogoWS._get_entry_dbs())
     self.assertTrue(
         dbs.issuperset(
             [
                 "nuccore",
                 "nucest",
                 "nucgss",
                 "nucleotide",
                 "protein",
                 "gene",
                 "omim",
                 "homologene",
                 "snp",
                 "mesh",
                 "pubmed",
                 "embl",
                 "uniprot",
                 "uniparc",
                 "uniref100",
                 "uniref90",
                 "uniref50",
                 "ddbj",
                 "dad",
                 "pdb",
                 "compound",
                 "drug",
                 "enzyme",
                 "genes",
                 "glycan",
                 "orthology",
                 "reaction",
                 "module",
                 "pathway",
             ]
         ),
         dbs,
     )