def test_ncbi_protein(self):
"""Check supported fields for NCBI protein database."""
fields = set(TogoWS._get_entry_fields("ncbi-protein"))
self.assertTrue(
fields.issuperset([
"entry_id",
"length",
"strand",
"moltype",
"linearity",
"division",
"date",
"definition",
"accession",
"accessions",
"version",
"versions",
"acc_version",
"gi",
"keywords",
"organism",
"common_name",
"taxonomy",
"comment",
"seq",
]),
fields,
)
def test_pubmed(self):
"""Check supported fields for pubmed database."""
fields = set(TogoWS._get_entry_fields("pubmed"))
self.assertTrue(
fields.issuperset(
['abstract', 'au', 'authors', 'doi', 'mesh', 'so', 'title']),
fields)
def test_ncbi_protein(self):
"""Check supported fields for NCBI protein database"""
fields = set(TogoWS._get_entry_fields("ncbi-protein"))
self.assertTrue(
fields.issuperset(
[
"entry_id",
"length",
"strand",
"moltype",
"linearity",
"division",
"date",
"definition",
"accession",
"accessions",
"version",
"versions",
"acc_version",
"gi",
"keywords",
"organism",
"common_name",
"taxonomy",
"comment",
"seq",
]
),
fields,
)
def test_pubmed(self):
"""Check supported fields for pubmed database."""
fields = set(TogoWS._get_entry_fields("pubmed"))
self.assertTrue(
fields.issuperset(
["abstract", "au", "authors", "doi", "mesh", "so", "title"]),
fields)
def test_ddbj(self):
"""Check supported fields for ddbj database."""
fields = set(TogoWS._get_entry_fields("ddbj"))
self.assertTrue(
fields.issuperset([
'entry_id', 'length', 'strand', 'moltype', 'linearity',
'division', 'date', 'definition', 'accession', 'accessions',
'version', 'versions', 'acc_version', 'gi', 'keywords',
'organism', 'common_name', 'taxonomy', 'comment', 'seq'
]), fields)
def test_ddbj(self):
"""Check supported fields for ddbj database"""
fields = set(TogoWS._get_entry_fields("ddbj"))
self.assertTrue(fields.issuperset(['entry_id', 'length', 'strand',
'moltype', 'linearity', 'division',
'date', 'definition', 'accession',
'accessions', 'version', 'versions',
'acc_version', 'gi', 'keywords',
'organism', 'common_name',
'taxonomy', 'comment', 'seq']),
fields)
def test_pdb(self):
"""Check supported fields for pdb database"""
fields = set(TogoWS._get_entry_fields("pdb"))
self.assert_(fields.issuperset(["accession", "chains", "keywords",
"models"]), fields)
def test_uniprot(self):
"""Check supported fields for uniprot database"""
fields = set(TogoWS._get_entry_fields("uniprot"))
self.assert_(fields.issuperset(["definition", "entry_id", "seq"]),
fields)
def test_pdb(self):
"""Check supported fields for pdb database"""
fields = set(TogoWS._get_entry_fields("pdb"))
self.assertTrue(fields.issuperset(["accession", "chains", "keywords",
"models"]), fields)
def test_uniprot(self):
"""Check supported fields for uniprot database"""
fields = set(TogoWS._get_entry_fields("uniprot"))
self.assertTrue(fields.issuperset(["definition", "entry_id", "seq"]),
fields)
def test_pubmed(self):
"""Check supported fields for pubmed database"""
fields = set(TogoWS._get_entry_fields("pubmed"))
self.assertTrue(fields.issuperset(['abstract', 'au', 'authors',
'doi', 'mesh', 'so',
'title']), fields)
def test_embl(self):
"""Check supported fields for embl database"""
fields = set(TogoWS._get_entry_fields("embl"))
self.assertTrue(fields.issuperset(["definition", "entry_id", "seq"]),
fields)
def test_pubmed(self):
"""Check supported fields for pubmed database"""
fields = set(TogoWS._get_entry_fields("pubmed"))
self.assertTrue(fields.issuperset(["abstract", "au", "authors", "doi", "mesh", "so", "title"]), fields)
def test_embl(self):
"""Check supported fields for embl database"""
fields = set(TogoWS._get_entry_fields("embl"))
self.assert_(fields.issuperset(["definition", "entry_id", "seq"]),
fields)
