def info(cs, sequence):
print_colored("INFO", "green")
seq = Seq(sequence)
response = seq.print_percentages(
) # -- We have created a new function in Seq1.py to print A: number (percentage)%
final_response = "Sequence: " + sequence + "\n" + "Total Length: " + str(
seq.len()) + "\n" + response
print(final_response)
cs.send(str(final_response).encode())
def info(sequence):
seq = Seq(sequence)
seq_info = "Total Length: " + str(seq.len())
context = {
'gene_information': seq_info,
'gene_name': sequence,
'gene_percentages': seq.print_percentages(
), # -- We have created a new function in Seq1.py to print A: number (percentage)%
'operation': "Info"
}
contents = read_template_html_file('./html/info.html').render(
context=context)
return contents
def gene_seq(arguments, path_name, HUMAN_GENES):
if arguments != {}:
gene = arguments['gene'][0]
ENDPOINT = "/sequence/id/"
id = HUMAN_GENES[gene]
connection = http.client.HTTPConnection(SERVER)
connection.request("GET", ENDPOINT + id + PARAMS)
response = connection.getresponse()
response_dict = json.loads(response.read().decode())
if path_name == "/geneSeq" and response.status == 200:
context = {'sequence': response_dict['seq'], 'gene': gene}
contents = read_template_html_file(
'./html/gene_sequence.html').render(context=context)
return contents
elif path_name == "/geneInfo" and response.status == 200:
sequence = Seq(response_dict['seq'])
chromo_info_list = response_dict['desc'].split(":")
context = {
'length': sequence.len(),
'start': chromo_info_list[3],
'end': chromo_info_list[4],
'chromo_name': chromo_info_list[1],
'id': response_dict['id'],
'gene': gene
}
contents = read_template_html_file(
'./html/gene_sequence_info.html').render(context=context)
return contents
elif path_name == "/geneCalc" and response.status == 200:
sequence = Seq(response_dict['seq'])
context = {
'length': sequence.len(),
'percentages': sequence.print_percentages(),
'gene': gene
}
contents = read_template_html_file(
'./html/gene_percentages.html').render(context=context)
return contents
else:
contents = read_template_html_file(
"html/errors/error.html").render()
return contents
else:
contents = read_template_html_file(
"html/errors/not_introduced.html").render()
return contents
