region.ElementCC3D("Width", {}, 5)
CompuCellSetup.setSimulationXMLDescription(cc3d)
import sys
from os import environ
import string
sys.path.append(environ["PYTHON_MODULE_PATH"])
import CompuCellSetup
sim,simthread = CompuCellSetup.getCoreSimulationObjects()
#Create extra player fields here or add attributes
pyAttributeAdder,listAdder=CompuCellSetup.attachListToCells(sim)
configureSimulation(sim)
CompuCellSetup.initializeSimulationObjects(sim,simthread)
from PySteppables import SteppableRegistry
steppableRegistry=SteppableRegistry()
from CellDiffusionCalculatorSteppable import *
CellDiffusionCalculator=CellDiffusionCalculatorSteppable(_simulator=sim,_frequency=50)
steppableRegistry.registerSteppable(CellDiffusionCalculator)
CompuCellSetup.mainLoop(sim,simthread,steppableRegistry)
import sys
from os import environ
from os import getcwd
import string
sys.path.append(environ["PYTHON_MODULE_PATH"])
import CompuCellSetup
CompuCellSetup.setSimulationXMLFileName("2D_vasculogenesis_control.xml")
sim,simthread = CompuCellSetup.getCoreSimulationObjects()
CompuCellSetup.initializeSimulationObjects(sim,simthread)
import CompuCell #notice importing CompuCell to main script has to be done after call to getCoreSimulationObjects()
pyAttributeAdder,listAdder=CompuCellSetup.attachListToCells(sim) ####Assigns a list to each cell in the cellList inventory. List elements are later attached to each cell.
pyAttributeAdderDict,dictAdder=CompuCellSetup.attachDictionaryToCells(sim) ####Assigns a dictionary to each cell in the cellList inventory. Dictionary elements are later attached to each cell.
#Add Python steppables here
from PySteppablesExamples import SteppableRegistry
steppableRegistry=SteppableRegistry()
from steppableBasedMitosisSteppables_control import VolumeParamSteppable
volumeParamSteppable=VolumeParamSteppable(sim,10)
steppableRegistry.registerSteppable(volumeParamSteppable)
from steppableBasedMitosisSteppables_control import MitosisSteppable
mitosisSteppable=MitosisSteppable(sim,10)
steppableRegistry.registerSteppable(mitosisSteppable)
# from steppableBasedMitosisSteppables import ProteinExpression
