# initiated by the psrun.py script to be an independent run after which runScript terminatesrestarts again for the next run
if cml_args.exitWhenDone:
maxNumberOfConsecutiveRuns = 1
allowRelaunch = False
except: # if for whatever reason we cannot do it we stay with the default value
pass
while (True): # by default we are looping the simulation to make sure parameter scans are handled properly
cc3dSimulationDataHandler = None
from FileLock import FileLock
with FileLock(file_name=fileName, timeout=10, delay=0.05) as flock:
CompuCellSetup.resetGlobals()
CompuCellSetup.simulationPaths = CompuCellSetup.SimulationPaths()
sim, simthread = CompuCellSetup.getCoreSimulationObjects(True)
# import PlayerPython
#
# field_handler = simthread
#
# field_extractor_local = PlayerPython.FieldExtractor()
# field_extractor_local.setFieldStorage(field_handler.fieldStorage)
# field_extractor_local.init(sim)
setSimulationResultStorageDirectory(
cmlParser.customScreenshotDirectoryName) # set Simulation output dir - it can be reset later - at this point only directory name is set. directory gets created later
if cmlParser.exitWhenDone:
maxNumberOfConsecutiveRuns = 1
allowRelaunch = False
except: # if for whatever reason we cannot do it we stay with the default value
pass
while (
True
): # by default we are looping the simulation to make sure parameter scans are handled properly
cc3dSimulationDataHandler = None
from FileLock import FileLock
with FileLock(file_name=fileName, timeout=10, delay=0.05) as flock:
CompuCellSetup.resetGlobals()
CompuCellSetup.simulationPaths = CompuCellSetup.SimulationPaths()
sim, simthread = CompuCellSetup.getCoreSimulationObjects(True)
setSimulationResultStorageDirectory(
cmlParser.customScreenshotDirectoryName
) # set Simulation output dir - it can be reset later - at this point only directory name is set. directory gets created later
CompuCellSetup.simulationFileName = fileName
# print 'GOT HERE'
if re.match(".*\.xml$", fileName): # If filename ends with .xml
print "GOT FILE ", fileName
pythonScriptName = CompuCellSetup.ExtractPythonScriptNameFromXML(
