def __savePlotAsPNG(self, _fileName, _sizeX, _sizeY, _mutex):
fileName = str(_fileName)
# pixmap=QPixmap(_sizeX,_sizeY) # worked on Windows, but not Linux/OSX
# pixmap.fill(QColor("white"))
imgmap = QImage(_sizeX, _sizeY, QImage.Format_ARGB32)
#imgmap.fill(Qt.white)
imgmap.fill(
qRgba(255, 255, 255, 255)
) # solid white background (should probably depend on user-chosen colors though)
self.pW.print_(imgmap)
# following seems pretty crude, but keep in mind user can change Prefs anytime during sim
# # # if Configuration.getSetting("OutputToProjectOn"):
# # # outDir = str(Configuration.getSetting("ProjectLocation"))
# # # else:
# # # outDir = str(Configuration.getSetting("OutputLocation"))
import CompuCellSetup
outDir = CompuCellSetup.getSimulationOutputDir()
outfile = os.path.join(outDir, fileName)
# print '--------- savePlotAsPNG: outfile=',outfile
imgmap.save(outfile, "PNG")
_mutex.unlock()
def savePlotAsData(self,_fileName):
# # # if Configuration.getSetting("OutputToProjectOn"):
# # # outDir = str(Configuration.getSetting("ProjectLocation"))
# # # else:
# # # outDir = str(Configuration.getSetting("OutputLocation")) # may to dump into image/lattice output dir instead
import CompuCellSetup
outDir=CompuCellSetup.getSimulationOutputDir()
outfile = os.path.join(outDir,_fileName)
print MODULENAME,' savePlotAsData(): outfile=',outfile
fpout = open(outfile, "w")
# print MODULENAME,' self.plotData= ',self.plotData
for idx in range(len(self.plotData)):
# print MODULENAME,' savePlotAsData(): ------- idx,name=',idx, self.plotData.keys()[idx]
fpout.write(self.plotData.keys()[idx] + '\n')
xvals = self.plotData.values()[idx][0]
yvals = self.plotData.values()[idx][1]
# print MODULENAME,' savePlotAsData(): xvals=',xvals
# print MODULENAME,' savePlotAsData(): yvals=',yvals
for jdx in range(len(xvals)):
xyStr = "%f %f\n" % (xvals[jdx],yvals[jdx])
fpout.write(xyStr)
# if (not _plotName in self.plotData.keys() ) or (not _plotName in self.plotDrawingObjects.keys() ):
fpout.close()
def savePlotAsData(self, _fileName, _outputFormat=LEGACY_FORMAT):
# PLOT_TYPE_POSITION=3
# (XYPLOT,HISTOGRAM,BARPLOT)=range(0,3)
import CompuCellSetup
outDir = CompuCellSetup.getSimulationOutputDir()
outfile = os.path.join(outDir, _fileName)
# print MODULENAME,' savePlotAsData(): outfile=',outfile
fpout = open(outfile, "w")
# print MODULENAME,' self.plotData= ',self.plotData
for plotName, plotData in self.plotData.iteritems():
# fpout.write(plotName+ '\n')
fieldSize = self.writeOutHeader(_file=fpout,
_plotName=plotName,
_outputFormat=_outputFormat)
xvals = plotData[0]
yvals = plotData[1]
# print MODULENAME,' savePlotAsData(): xvals=',xvals
# print MODULENAME,' savePlotAsData(): yvals=',yvals
if _outputFormat == LEGACY_FORMAT:
if plotData[PLOT_TYPE_POSITION] == XYPLOT or plotData[
PLOT_TYPE_POSITION] == BARPLOT:
for jdx in range(len(xvals)):
xyStr = "%f %f\n" % (xvals[jdx], yvals[jdx])
fpout.write(xyStr)
elif plotData[PLOT_TYPE_POSITION] == HISTOGRAM:
for jdx in range(len(xvals) - 1):
xyStr = "%f %f\n" % (xvals[jdx], yvals[jdx])
fpout.write(xyStr)
elif _outputFormat == CSV_FORMAT:
fmt = ''
fmt += '{0:>' + str(fieldSize) + '},'
fmt += '{1:>' + str(fieldSize) + '}\n'
if plotData[PLOT_TYPE_POSITION] == XYPLOT or plotData[
PLOT_TYPE_POSITION] == BARPLOT:
for jdx in range(len(xvals)):
xyStr = fmt.format(xvals[jdx], yvals[jdx])
# "%f %f\n" % (xvals[jdx],yvals[jdx])
fpout.write(xyStr)
elif plotData[PLOT_TYPE_POSITION] == HISTOGRAM:
for jdx in range(len(xvals) - 1):
xyStr = fmt.format(xvals[jdx], yvals[jdx])
# xyStr = "%f %f\n" % (xvals[jdx],yvals[jdx])
fpout.write(xyStr)
else:
raise LookupError(MODULENAME + " savePlotAsData :" +
"Requested output format: " + outputFormat +
" does not exist")
fpout.write('\n') #separating data series by a line
fpout.close()
def savePlotAsData(self,_fileName,_outputFormat=LEGACY_FORMAT):
# PLOT_TYPE_POSITION=3
# (XYPLOT,HISTOGRAM,BARPLOT)=range(0,3)
import CompuCellSetup
outDir=CompuCellSetup.getSimulationOutputDir()
outfile = os.path.join(outDir,_fileName)
# print MODULENAME,' savePlotAsData(): outfile=',outfile
fpout = open(outfile, "w")
# print MODULENAME,' self.plotData= ',self.plotData
for plotName,plotData in self.plotData.iteritems():
# fpout.write(plotName+ '\n')
fieldSize=self.writeOutHeader( _file=fpout,_plotName=plotName, _outputFormat=_outputFormat)
xvals = plotData[0]
yvals = plotData[1]
# print MODULENAME,' savePlotAsData(): xvals=',xvals
# print MODULENAME,' savePlotAsData(): yvals=',yvals
if _outputFormat==LEGACY_FORMAT:
if plotData[PLOT_TYPE_POSITION]==XYPLOT or plotData[PLOT_TYPE_POSITION]==BARPLOT:
for jdx in range(len(xvals)):
xyStr = "%f %f\n" % (xvals[jdx],yvals[jdx])
fpout.write(xyStr)
elif plotData[PLOT_TYPE_POSITION]==HISTOGRAM:
for jdx in range(len(xvals)-1):
xyStr = "%f %f\n" % (xvals[jdx],yvals[jdx])
fpout.write(xyStr)
elif _outputFormat==CSV_FORMAT:
fmt=''
fmt+='{0:>'+str(fieldSize)+'},'
fmt+='{1:>'+str(fieldSize)+'}\n'
if plotData[PLOT_TYPE_POSITION]==XYPLOT or plotData[PLOT_TYPE_POSITION]==BARPLOT:
for jdx in range(len(xvals)):
xyStr = fmt.format(xvals[jdx],yvals[jdx])
# "%f %f\n" % (xvals[jdx],yvals[jdx])
fpout.write(xyStr)
elif plotData[PLOT_TYPE_POSITION]==HISTOGRAM:
for jdx in range(len(xvals)-1):
xyStr = fmt.format(xvals[jdx],yvals[jdx])
# xyStr = "%f %f\n" % (xvals[jdx],yvals[jdx])
fpout.write(xyStr)
else:
raise LookupError(MODULENAME+" savePlotAsData :"+"Requested output format: "+outputFormat+" does not exist")
fpout.write('\n') #separating data series by a line
fpout.close()
def __savePlotAsPNG(self,_fileName,_sizeX,_sizeY,_mutex):
fileName=str(_fileName)
# pixmap=QPixmap(_sizeX,_sizeY) # worked on Windows, but not Linux/OSX
# pixmap.fill(QColor("white"))
imgmap = QImage(_sizeX, _sizeY, QImage.Format_ARGB32)
#imgmap.fill(Qt.white)
imgmap.fill(qRgba(255, 255, 255, 255)) # solid white background (should probably depend on user-chosen colors though)
self.pW.print_(imgmap)
# following seems pretty crude, but keep in mind user can change Prefs anytime during sim
# # # if Configuration.getSetting("OutputToProjectOn"):
# # # outDir = str(Configuration.getSetting("ProjectLocation"))
# # # else:
# # # outDir = str(Configuration.getSetting("OutputLocation"))
import CompuCellSetup
outDir=CompuCellSetup.getSimulationOutputDir()
outfile = os.path.join(outDir,fileName)
# print '--------- savePlotAsPNG: outfile=',outfile
imgmap.save(outfile,"PNG")
_mutex.unlock()
