def install_data_rsync(config_source): """Install data using pre-existing genomes from Galaxy rsync servers. """ _check_version() genomes, genome_indexes, config = _get_genomes(config_source) genome_indexes += [x for x in DEFAULT_GENOME_INDEXES if x not in genome_indexes] genome_dir = _make_genome_dir() galaxy.rsync_genomes(genome_dir, genomes, genome_indexes)
def install_data_rsync(config_source): """Install data using pre-existing genomes from Galaxy rsync servers. """ _check_version() genomes, genome_indexes, config = _get_genomes(config_source) genome_indexes += [x for x in DEFAULT_GENOME_INDEXES if x not in genome_indexes] # Galaxy stores FASTAs in ucsc format and generates on the fly if "ucsc" not in genome_indexes: genome_indexes.append("ucsc") genome_dir = _make_genome_dir() galaxy.rsync_genomes(genome_dir, genomes, genome_indexes)