def test_toFasta(self):
"""Flowgram toFasta() should return Fasta-format string"""
even = '0.5 1.0 4.0 0.0'
odd = '0.5 1.0 4.0 1.0'
even_f = Flowgram(even, Name='even', floworder = "TACG")
odd_f = Flowgram(odd, Name='odd', floworder = "TACG")
self.assertEqual(even_f.toFasta(), '>even\nTACCCC')
#set line wrap to small number so we can test that it works
self.assertEqual(even_f.toFasta(LineWrap = 2), '>even\nTA\nCC\nCC')
self.assertEqual(odd_f.toFasta(LineWrap = 2), '>odd\nTA\nCC\nCC\nG')
even_f = Flowgram(even, Name='even', floworder = "TACG",
header_info ={'Bases':'TACCCG'})
odd_f = Flowgram(odd, Name='odd', floworder = "TACG",
header_info ={'Bases':'TACCCGG'})
self.assertEqual(even_f.toFasta(), '>even\nTACCCG')
#set line wrap to small number so we can test that it works
self.assertEqual(even_f.toFasta(LineWrap = 2), '>even\nTA\nCC\nCG')
self.assertEqual(odd_f.toFasta(LineWrap = 2), '>odd\nTA\nCC\nCG\nG')
def test_toFasta(self):
"""Flowgram toFasta() should return Fasta-format string"""
even = '0.5 1.0 4.0 0.0'
odd = '0.5 1.0 4.0 1.0'
even_f = Flowgram(even, Name='even', floworder="TACG")
odd_f = Flowgram(odd, Name='odd', floworder="TACG")
self.assertEqual(even_f.toFasta(), '>even\nTACCCC')
#set line wrap to small number so we can test that it works
self.assertEqual(even_f.toFasta(LineWrap=2), '>even\nTA\nCC\nCC')
self.assertEqual(odd_f.toFasta(LineWrap=2), '>odd\nTA\nCC\nCC\nG')
even_f = Flowgram(even,
Name='even',
floworder="TACG",
header_info={'Bases': 'TACCCG'})
odd_f = Flowgram(odd,
Name='odd',
floworder="TACG",
header_info={'Bases': 'TACCCGG'})
self.assertEqual(even_f.toFasta(), '>even\nTACCCG')
#set line wrap to small number so we can test that it works
self.assertEqual(even_f.toFasta(LineWrap=2), '>even\nTA\nCC\nCG')
self.assertEqual(odd_f.toFasta(LineWrap=2), '>odd\nTA\nCC\nCG\nG')
