def test_toSeq(self):
"""toSeq should Translate flowgram to sequence"""
f = Flowgram('0.5 1.0 4.0 0.0', Name = 'a',floworder = "TACG",
header_info = {'Bases':'TACCCG'})
self.assertEqual(f.toSeq(), 'TACCCG')
self.assertEqual(isinstance(f.toSeq(),Sequence), True)
self.assertEqual(f.toSeq(Bases = False), 'TACCCC')
f = Flowgram('0.5 1.0 4.0 0.0 0.0 1.23 0.0 6.1',
Name = 'a',floworder = "TACG",
header_info = {'Bases':'TACCCG'})
self.assertEqual(f.toSeq(), 'TACCCG')
self.assertEqual(f.toSeq(Bases = False), 'TACCCCAGGGGGG')
f = Flowgram('0.5 1.0 4.0 0.0', Name = 'a',floworder = "TACG",
header_info = {})
self.assertEqual(f.toSeq(), 'TACCCC')
self.assertEqual(isinstance(f.toSeq(),Sequence), True)
self.assertEqual(f.toSeq(Bases = False), 'TACCCC')
f = Flowgram('0.5 1.0 4.0 0.0 0.0 1.23 0.0 6.1',
Name = 'a',floworder = "TACG",
header_info = {})
self.assertEqual(f.toSeq(Bases = True), 'TACCCCAGGGGGG')
f = Flowgram('0.4 0.0 0.0 0.0 0.0 1.23 0.0 1.1',
Name = 'a',floworder = "TACG",
header_info = {})
self.assertEqual(f.toSeq(), 'NAG')
def test_toSeq(self):
"""toSeq should Translate flowgram to sequence"""
f = Flowgram('0.5 1.0 4.0 0.0',
Name='a',
floworder="TACG",
header_info={'Bases': 'TACCCG'})
self.assertEqual(f.toSeq(), 'TACCCG')
self.assertEqual(isinstance(f.toSeq(), Sequence), True)
self.assertEqual(f.toSeq(Bases=False), 'TACCCC')
f = Flowgram('0.5 1.0 4.0 0.0 0.0 1.23 0.0 6.1',
Name='a',
floworder="TACG",
header_info={'Bases': 'TACCCG'})
self.assertEqual(f.toSeq(), 'TACCCG')
self.assertEqual(f.toSeq(Bases=False), 'TACCCCAGGGGGG')
f = Flowgram('0.5 1.0 4.0 0.0',
Name='a',
floworder="TACG",
header_info={})
self.assertEqual(f.toSeq(), 'TACCCC')
self.assertEqual(isinstance(f.toSeq(), Sequence), True)
self.assertEqual(f.toSeq(Bases=False), 'TACCCC')
f = Flowgram('0.5 1.0 4.0 0.0 0.0 1.23 0.0 6.1',
Name='a',
floworder="TACG",
header_info={})
self.assertEqual(f.toSeq(Bases=True), 'TACCCCAGGGGGG')
f = Flowgram('0.4 0.0 0.0 0.0 0.0 1.23 0.0 1.1',
Name='a',
floworder="TACG",
header_info={})
self.assertEqual(f.toSeq(), 'NAG')
