analyser_wavelength = nfile["/entry/instrument/analyzer%d/wavelength" % (i+1)].value[remove_ghosts]
analyser_energy = 81.8042051/analyser_wavelength**2
bank_id = "bank%d" % (i+1)
det.addComponent(bank_id, idlist=bank_id, root=handle_silicon)
(xbank, ybank, zbank) = pixels_physical_xyz(i)
det.addComponent(bank_id, bank_id)
#doc_handle = det.makeTypeElement(bank_id)
det.addDetectorPixels(bank_id, x=xbank, y=ybank, z=zbank,
names=pixel_id, energy=analyser_energy,
neutronic=True,
nr=distance, ntheta=polar_angle, nphi=azimuthal_angle,)
det.addDetectorPixelsIdList(bank_id, r=distance, names=pixel_id)
# Create the diffraction bank information
det.addComponent("elastic", "elastic")
handle = det.makeTypeElement("elastic")
idlist = []
detector_z = [-2.1474825,-1.704594,-1.108373,-0.4135165,0.3181,1.0218315,1.6330115,2.0993535,2.376999]
detector_x = [1.1649855,1.7484015,2.175541,2.408594,2.422933,2.216378,1.8142005,1.247867,0.5687435]
detector_y = [-0.001807,-0.001801,-0.0011845,-0.0006885,-0.0013145,-0.001626,-0.001397,0.0003465,-0.0001125]
for i in range(ELASTIC_BANK_START, ELASTIC_BANK_END+1):
bank_name = "bank%d" % i
det.addComponent(bank_name, root=handle)
def generate_reflection_file(reflection_key):
r"""
Parameters
----------
reflection_key: str
Returns
-------
"""
refl = reflections[reflection_key]
if not os.path.exists(refl['nexus']):
message = '{} not found. Not creating geometry'.format(refl['nexus'])
raise FileExistsError(message)
inst_name = "BASIS"
# Set header information
comment = "Created by Michael Reuter and Jose Borreguero"
# Time needs to be in UTC?
valid_from = "2014-01-01 00:00:00"
xml_outfile = '{}_Definition_Si{}.xml'.format(inst_name, reflection_key)
nfile = h5py.File(refl['nexus'], 'r')
det = MantidGeom(inst_name, comment=comment, valid_from=valid_from)
det.addSnsDefaults(indirect=True)
det.addComment("SOURCE AND SAMPLE POSITION")
det.addModerator(-84.0)
det.addSamplePosition()
det.addComment("MONITORS")
det.addMonitors(names=["monitor1"], distance=["-0.23368"], neutronic=True)
# Create the inelastic banks information
det.addComment('INELASTIC DECTECTORS')
det.addComponent('silicon')
handle_silicon = det.makeTypeElement("silicon")
# Slicer for removing ghosts. Due to the mapping, the ghost tubes sit
# on the same sides of the arrays for all banks.
remove_ghosts = slice(-INELASTIC_TUBES_NGHOST)
for i in range(n_inelastic_banks):
bank_id = "bank%d" % (i + 1)
pixel_id = nfile["/entry/instrument/bank%d/pixel_id" %
(i + 1)].value[remove_ghosts]
distance = nfile["/entry/instrument/bank%d/distance" %
(i + 1)].value[remove_ghosts]
# theta or polar_angle: angle from the Z-axis towards the X-axis
polar_angle = nfile["/entry/instrument/bank%d/polar_angle" %
(i + 1)].value[remove_ghosts]
polar_angle *= (180.0 / math.pi)
# phi or azimuthal_angle: angle in the XY-plane
azimuthal_angle = nfile["/entry/instrument/bank%d/azimuthal_angle" %
(i + 1)].value[remove_ghosts]
azimuthal_angle *= (180.0 / math.pi)
analyser_wavelength = nfile["/entry/instrument/analyzer%d/wavelength" %
(i + 1)].value[remove_ghosts]
analyser_wavelength *= refl['ratio_to_irreducible_hkl']
analyser_energy = 81.8042051 / analyser_wavelength**2
det.addComponent(bank_id, idlist=bank_id, root=handle_silicon)
xbank, ybank, zbank = pixels_physical_xyz(i)
det.addDetectorPixels(bank_id,
x=xbank,
y=ybank,
z=zbank,
names=pixel_id,
energy=analyser_energy,
nr=distance,
ntheta=polar_angle,
nphi=azimuthal_angle,
output_efixed=refl['efixed'])
det.addDetectorPixelsIdList(bank_id,
r=distance,
names=pixel_id,
elg="multiple_ranges")
# Create the diffraction bank information
det.addComponent("elastic", "elastic")
handle = det.makeTypeElement("elastic")
idlist = []
detector_z = [
-2.1474825, -1.704594, -1.108373, -0.4135165, 0.3181, 1.0218315,
1.6330115, 2.0993535, 2.376999
]
detector_x = [
1.1649855, 1.7484015, 2.175541, 2.408594, 2.422933, 2.216378,
1.8142005, 1.247867, 0.5687435
]
detector_y = [
-0.001807, -0.001801, -0.0011845, -0.0006885, -0.0013145, -0.001626,
-0.001397, 0.0003465, -0.0001125
]
for i in range(ELASTIC_BANK_START, ELASTIC_BANK_END + 1):
bank_name = "bank%d" % i
det.addComponent(bank_name, root=handle)
k = i - ELASTIC_BANK_START
x_coord = detector_x[k]
y_coord = detector_y[k]
z_coord = detector_z[k]
det.addDetector(x_coord,
y_coord,
z_coord,
0.0,
0.,
90.,
bank_name,
"tube-elastic",
facingSample=True)
idlist.append(ELASTIC_DETECTORID_START + ELASTIC_TUBE_NPIXELS *
(i - ELASTIC_BANK_START))
idlist.append(ELASTIC_DETECTORID_START + ELASTIC_TUBE_NPIXELS *
(i - ELASTIC_BANK_START) + ELASTIC_TUBE_NPIXELS - 1)
idlist.append(None)
# Diffraction tube information
det.addComment("ELASTIC TUBE (90 degrees)")
det.addPixelatedTube("tube-elastic",
ELASTIC_TUBE_NPIXELS,
ELASTIC_TUBE_LENGTH,
"pixel-elastic-tube",
neutronic=True,
neutronicIsPhysical=True)
# Set the diffraction pixel Ids
det.addDetectorIds("elastic", idlist)
# Creating diffraction pixel
det.addComment("PIXEL FOR DIFFRACTION TUBES")
det.addCylinderPixel("pixel-elastic-tube", (0.0, 0.0, 0.0),
(0.0, 1.0, 0.0), (ELASTIC_TUBE_WIDTH / 2.0),
(ELASTIC_TUBE_LENGTH / ELASTIC_TUBE_NPIXELS))
det.addComment("PIXEL FOR INELASTIC TUBES")
det.addCylinderPixel(
"pixel", (0.0, 0.0, 0.0), (0.0, 1.0, 0.0),
INELASTIC_TUBE_WIDTH * (1.0 - INELASTIC_PIXEL_RADIUS_GAP_RATIO) / 2.0,
INELASTIC_TUBE_LENGTH * (1.0 - INELASTIC_PIXEL_HEIGHT_GAP_RATIO) /
INELASTIC_TUBE_NPIXEL,
is_type="detector",
algebra="cyl-approx")
det.addComment("MONITOR SHAPE")
det.addComment("FIXME: Do something real here.")
det.addDummyMonitor(0.01, 0.03)
det.addComment("MONITOR IDs")
det.addMonitorIds(["-1"])
det.writeGeom(xml_outfile)
# Always clean after yourself
nfile.close()
def generate_reflection_file(reflection_key):
r"""
Parameters
----------
reflection_key: str
Returns
-------
"""
refl = reflections[reflection_key]
if not os.path.exists(refl['nexus']):
message = '{} not found. Not creating geometry'.format(refl['nexus'])
raise FileExistsError(message)
inst_name = "BASIS"
# Set header information
comment = "Created by Michael Reuter and Jose Borreguero"
# Time needs to be in UTC?
valid_from = "2014-01-01 00:00:00"
xml_outfile = '{}_Definition_Si{}.xml'.format(inst_name, reflection_key)
nfile = h5py.File(refl['nexus'], 'r')
det = MantidGeom(inst_name, comment=comment, valid_from=valid_from)
det.addSnsDefaults(indirect=True)
det.addComment("SOURCE AND SAMPLE POSITION")
det.addModerator(-84.0)
det.addSamplePosition()
det.addComment("MONITORS")
det.addMonitors(names=["monitor1"], distance=["-0.23368"], neutronic=True)
# Create the inelastic banks information
det.addComment('INELASTIC DECTECTORS')
det.addComponent('silicon')
handle_silicon = det.makeTypeElement("silicon")
# Slicer for removing ghosts. Due to the mapping, the ghost tubes sit
# on the same sides of the arrays for all banks.
remove_ghosts = slice(-INELASTIC_TUBES_NGHOST)
for i in range(n_inelastic_banks):
bank_id = "bank%d" % (i+1)
pixel_id = nfile["/entry/instrument/bank%d/pixel_id" % (i+1)].value[remove_ghosts]
distance = nfile["/entry/instrument/bank%d/distance" % (i+1)].value[remove_ghosts]
# theta or polar_angle: angle from the Z-axis towards the X-axis
polar_angle = nfile["/entry/instrument/bank%d/polar_angle" % (i+1)].value[remove_ghosts]
polar_angle *= (180.0/math.pi)
# phi or azimuthal_angle: angle in the XY-plane
azimuthal_angle = nfile["/entry/instrument/bank%d/azimuthal_angle" % (i+1)].value[remove_ghosts]
azimuthal_angle *= (180.0/math.pi)
analyser_wavelength = nfile["/entry/instrument/analyzer%d/wavelength" % (i+1)].value[remove_ghosts]
analyser_wavelength *= refl['ratio_to_irreducible_hkl']
analyser_energy = 81.8042051/analyser_wavelength**2
det.addComponent(bank_id, idlist=bank_id, root=handle_silicon)
xbank, ybank, zbank = pixels_physical_xyz(i)
det.addDetectorPixels(bank_id, x=xbank, y=ybank, z=zbank,
names=pixel_id, energy=analyser_energy,
nr=distance, ntheta=polar_angle,
nphi=azimuthal_angle,
output_efixed=refl['efixed'])
det.addDetectorPixelsIdList(bank_id, r=distance, names=pixel_id,
elg="multiple_ranges")
# Create the diffraction bank information
det.addComponent("elastic", "elastic")
handle = det.makeTypeElement("elastic")
idlist = []
detector_z = [-2.1474825, -1.704594, -1.108373, -0.4135165, 0.3181,
1.0218315, 1.6330115, 2.0993535, 2.376999]
detector_x = [1.1649855, 1.7484015, 2.175541, 2.408594, 2.422933,
2.216378, 1.8142005, 1.247867, 0.5687435]
detector_y = [-0.001807, -0.001801, -0.0011845, -0.0006885, -0.0013145,
-0.001626, -0.001397, 0.0003465, -0.0001125]
for i in range(ELASTIC_BANK_START, ELASTIC_BANK_END+1):
bank_name = "bank%d" % i
det.addComponent(bank_name, root=handle)
k = i - ELASTIC_BANK_START
x_coord = detector_x[k]
y_coord = detector_y[k]
z_coord = detector_z[k]
det.addDetector(x_coord, y_coord, z_coord, 0.0, 0., 90.,
bank_name, "tube-elastic", facingSample=True)
idlist.append(ELASTIC_DETECTORID_START +
ELASTIC_TUBE_NPIXELS*(i-ELASTIC_BANK_START))
idlist.append(ELASTIC_DETECTORID_START +
ELASTIC_TUBE_NPIXELS*(i-ELASTIC_BANK_START) +
ELASTIC_TUBE_NPIXELS-1)
idlist.append(None)
# Diffraction tube information
det.addComment("ELASTIC TUBE (90 degrees)")
det.addPixelatedTube("tube-elastic", ELASTIC_TUBE_NPIXELS,
ELASTIC_TUBE_LENGTH, "pixel-elastic-tube",
neutronic=True, neutronicIsPhysical=True)
# Set the diffraction pixel Ids
det.addDetectorIds("elastic", idlist)
# Creating diffraction pixel
det.addComment("PIXEL FOR DIFFRACTION TUBES")
det.addCylinderPixel("pixel-elastic-tube",
(0.0, 0.0, 0.0), (0.0, 1.0, 0.0),
(ELASTIC_TUBE_WIDTH/2.0),
(ELASTIC_TUBE_LENGTH/ELASTIC_TUBE_NPIXELS))
det.addComment("PIXEL FOR INELASTIC TUBES")
det.addCylinderPixel("pixel", (0.0, 0.0, 0.0), (0.0, 1.0, 0.0),
INELASTIC_TUBE_WIDTH * (1.0-INELASTIC_PIXEL_RADIUS_GAP_RATIO) / 2.0,
INELASTIC_TUBE_LENGTH * (1.0-INELASTIC_PIXEL_HEIGHT_GAP_RATIO) / INELASTIC_TUBE_NPIXEL,
is_type="detector", algebra="cyl-approx")
det.addComment("MONITOR SHAPE")
det.addComment("FIXME: Do something real here.")
det.addDummyMonitor(0.01, 0.03)
det.addComment("MONITOR IDs")
det.addMonitorIds(["-1"])
det.writeGeom(xml_outfile)
# Always clean after yourself
nfile.close()
analyser_wavelength = file["/entry/instrument/analyzer%d/wavelength" %
(i + 1)].value
analyser_energy = 81.8042051 / analyser_wavelength**2
bank_id = "bank%d" % (i + 1)
det.addComponent(bank_id, bank_id)
#doc_handle = det.makeTypeElement(bank_id)
det.addDetectorPixels(bank_id,
r=distance,
theta=polar_angle,
phi=azimuthal_angle,
names=pixel_id,
energy=analyser_energy)
det.addDetectorPixelsIdList(bank_id, r=distance, names=pixel_id)
# Pixel Height
y_pixel_offset = file["/entry/instrument/bank1/y_pixel_offset"].value
pixel_ysize = y_pixel_offset[1] - y_pixel_offset[0]
# Pixel Width
x_pixel_offset = file["/entry/instrument/bank1/x_pixel_offset"].value
pixel_xsize = x_pixel_offset[1] - x_pixel_offset[0]
# Lets just make them bigger for a moment so we can see them
pixel_xsize *= 5.0
pixel_ysize *= 2.0
# arbitary value plucked from thin air!
detector_depth = 0.01
