예제 #1
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def test_get_3prime_utr_length_CTNNB1():

    transcript_id = "ENST00000405570"
    exons = ensembl.get_exons_from_transcript(transcript_id)

    utr_length = ensembl.get_three_prime_utr_length(exons)
    print utr_length
    assert(utr_length == 11)
예제 #2
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def test_get_3prime_utr_length_reverse_strand_CASP9():

    transcript_id = "ENST00000333868"
    exons = ensembl.get_exons_from_transcript(transcript_id)

    utr_length = ensembl.get_three_prime_utr_length(exons, forward = False)
    print utr_length
    assert(utr_length == 673)
예제 #3
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def test_get_3prime_utr_length_RET():

    transcript_id = "ENST00000355710"
    exons = ensembl.get_exons_from_transcript(transcript_id)

    utr_length = ensembl.get_three_prime_utr_length(exons)
    print utr_length
    assert(utr_length == 2082)