# FINDS THE TISSUE AREA
img2 = imp.duplicate()
channels2=ChannelSplitter.split(img2);
redimg2=channels2[0];
IJ.run(redimg2, "8-bit", "");
IJ.setAutoThreshold(redimg2, "Default dark");
IJ.setThreshold(redimg2,20, 254);
IJ.run(redimg2, "Convert to Mask", "");
redimg2.show()
time.sleep(1)
rt2 = ResultsTable()
ta=Analyzer(redimg2,Measurements.AREA|Measurements.LIMIT,rt2)
ta.measure();
double=rt2.getColumnAsDoubles(rt2.getColumnIndex("Area"))
summary["Tissue-area"] =double[0];
redimg2.changes = False
redimg2.close()
# PARTICLE ANALYSIS ETC..
channels = ChannelSplitter.split(imp);
for i, channel in enumerate(channels):
IJ.setAutoThreshold(channel,"Default");
summary[color[i] + "-intensity"] = "NA"
summary[color[i] + "-ROI-count"] = "NA"
