def writeCSV(filePath, results, header):
""" Write a table as an csv file """
rt = ResultsTable()
for i in range(len(results[1])):
rt.incrementCounter()
for j in range(len(results)):
rt.addValue(str(header[j]), results[j][i])
rt.show("Results")
rt.saveAs(filePath);
#print allPearson
#print average(allPearson)
ort.show("Distance map")
ort2.show("Point measurements")
"""
Saving the Results tables:
Result tables will be saved to the directory specified in "savepath"
"""
dataname = imp_orig.getShortTitle()
if automatic_save_results:
# Gather filenames of the savedirectory
filename_ort = dataname + "_Distance_Map_001.csv"
savename_ort = savepath + "/" + filename_ort # Generate complete savepath
print savename_ort
ort.saveAs(savename_ort) # save
# Gather filenames of the savedirectory
# Gather filenames of the savedirectory
filename_ort2 = dataname + "_PointMeasurements_001.csv"
savename_ort2 = savepath + "/" + filename_ort2 # Generate complete savepath
print savename_ort2
ort2.saveAs(savename_ort2) # save
IJ.run(imp, "Select None", "")
imp.changes = False
rm.runCommand("reset")
time.sleep(0.5)
ort = ResultsTable()
ort.setPrecision(2)
ort.incrementCounter()
ort.addValue("Channel1", Channel1_count)
ort.addValue("Channel2", Channel2_count)
ort.addValue("Channel3", Channel3_count)
ort.addValue("Channel4", Channel4_count)
ort.show("Results")
if automatic_save_results:
dataname = imp1.getTitle()
filename = dataname + ".csv"
#files = glob.glob(savepath+"/"+dataname+"*.csv")
savename = savepath + "/" + filename
ort.saveAs(savename)
Channel1.changes = False
Channel1.close()
Channel2.changes = False
Channel2.close()
Channel3.changes = False
Channel3.close()
Channel4.changes = False
Channel4.close()
imp1.close()
