def buildMatchMetrics(infile, outfile):
'''
match outputs transcription factors that are found in the supplied
sequences. We are interested in the following metrics:
* No. unique transcription factors found per sequence
* Maximal number of TF motifs found per sequence
'''
tablename = filenameToTablename(os.path.basename(P.snip(infile, ".load"))) + "_result"
PipelineTransfacMatch.frequencyMetrics(PARAMS["database"], tablename, outfile)
def buildMatchMetrics(infile, outfile):
'''
match outputs transcription factors that are found in the supplied
sequences. We are interested in the following metrics:
* No. unique transcription factors found per sequence
* Maximal number of TF motifs found per sequence
'''
tablename = filenameToTablename(os.path.basename(P.snip(
infile, ".load"))) + "_result"
PipelineTFM.frequencyMetrics(PARAMS["database"], tablename, outfile)
