def matchBackgroundForCpGComposition(infiles, outfile):
'''
take the background set and subset it for intervals with
a CpG distribution that is the same as the foreground set
- this requires that the background set is sufficiently
large
'''
track = re.match(
"GC_content.dir/(.+)\.(?:background|foreground)\.gc\.load", infiles[0]).groups()[0]
input_background = "%s.background.tsv" % track
input_foreground = "%s.foreground.tsv" % track
PipelineTransfacMatch.matchBackgroundForCpGComposition(
infiles, input_background, input_foreground, PARAMS["database"], outfile)
def matchBackgroundForCpGComposition(infiles, outfile):
'''
take the background set and subset it for intervals with
a CpG distribution that is the same as the foreground set
- this requires that the background set is sufficiently
large
'''
track = re.match(
"GC_content.dir/(.+)\.(?:background|foreground)\.gc\.load",
infiles[0]).groups()[0]
input_background = "%s.background.tsv" % track
input_foreground = "%s.foreground.tsv" % track
PipelineTransfacMatch.matchBackgroundForCpGComposition(
infiles, input_background, input_foreground, PARAMS["database"],
outfile)
