def rlearn(config, parser): #@UnusedVariable
t0 = time.time()
""" Displays the learned DDS """
parser.add_option("-n", "--nthreads", help="Number of threads",
type='int', default='4')
parser.add_option("-r", "--nrefine", help="Number of time to refine learning",
type='int', default='2')
parser.add_option("-s", "--streams", help="Which streams to use.",
default="*")
parser.add_option("-i", "--comb", default="default")
parser.add_option("-l", "--learners", help="Learner config.", default="*")
parser.add_option("-o", "--output", help="Output directory",
default='out/dp-rlearn/')
parser.add_option("--sensels", default=None,
help="Sensel indices to use for debuging refining module")
parser.add_option("-c", "--command",
help="Command to pass to compmake for batch mode")
parser.add_option("--show", default=None, help="Name of learners to report")
options = parser.parse_options()
if options.show is not None:
diffeomorphism2d_continuous.make_report(options.show.split(','))
sys.exit()
nthreads = options.nthreads
nrefine = options.nrefine
learners = config.learners.expand_names(options.learners)
streams = config.streams.expand_names(options.streams)
if len(learners) > 1:
logger.warn('Multiple learners are not supported for now')
if len(streams) > 1:
logger.warn('Multiple streams are not supported for now')
id_comb = ",".join(streams) + "-" + ",".join(learners)
outdir = os.path.join(options.output, id_comb)
storage = os.path.join(outdir, 'compmake')
use_filesystem(storage)
read_rc_files()
rm = ReportManager(os.path.join(outdir, 'reports'))
jobs_rlearn(config, rm, learners, streams, outdir, nthreads, nrefine, options.sensels)
# Time and report the learning
comp(learning_times_rlearn, outdir, learners, streams, nthreads, nrefine)
rm.create_index_job()
if options.command:
return batch_command(options.command)
else:
compmake_console()
return 0
logger.info("Done after time: " + str(time.time() - t0) + ' seconds')
def dp_predstats_main(config, parser):
parser.add_option("-o", "--output", default='out/dp-pred-stats',
help="Output directory")
parser.add_option("-d", "--distances", default='*',
help="Comma-separated list of distances. Can use *.")
parser.add_option("-S", "--dds",
help="Comma-separated list of diffeosystems.")
parser.add_option("-s", "--streams",
help="Comma-separated list of streams.")
parser.add_option("-c", "--command",
help="Command to pass to compmake for batch mode")
options = parser.parse_options()
if not options.streams:
msg = 'Please specify streams using -s.'
raise UserError(msg)
if not options.dds:
msg = 'Please specify which discdds to use.'
raise UserError(msg)
distances = config.distances.expand_names(options.distances)
streams = config.streams.expand_names(options.streams)
dds = config.streams.expand_names(options.dds)
logger.info('Using distances: %s' % distances)
logger.info('Using streams: %s' % streams)
logger.info('Using discdds: %s' % dds)
outdir = '%s/%s' % (options.output, options.dds)
storage = os.path.join(outdir, 'compmake')
use_filesystem(storage)
read_rc_files()
rm = ReportManager(os.path.join(outdir, "reports"))
# for id_discdds in dds:
create_predstats_jobs(config=config, distances=distances,
id_discdds=dds,
streams=streams, rm=rm, maxd=10)
rm.create_index_job()
if options.command:
return batch_command(options.command)
else:
compmake_console()
return 0
def dp_dist_stats(config, parser): #@UnusedVariable
""" Computes statistics for images distances for different plan steps. """
parser.add_option("-o",
"--output",
default='out/dp-dist-stats',
help="Output directory")
parser.add_option("-d",
"--distances",
default='*',
help="Comma-separated list of distances. Can use *.")
parser.add_option("-s",
"--streams",
default='*',
help="Comma-separated list of streams. Can use *.")
parser.add_option("-r",
"--repeat",
default=1,
type='int',
help="Repeat many times.")
parser.add_option("-c",
"--command",
help="Command to pass to compmake for batch mode")
options = parser.parse_options()
distances = natsorted(config.distances.expand_names(options.distances))
streams = natsorted(config.streams.expand_names(options.streams))
logger.info('Using distances: %s' % distances)
logger.info('Using streams: %s' % streams)
id_comb = ','.join(streams) + '-' + ','.join(distances)
outdir = os.path.join(options.output, id_comb)
storage = os.path.join(outdir, 'compmake')
use_filesystem(storage)
read_rc_files()
rm = ReportManager(os.path.join(outdir, "reports"))
create_diststats_jobs(config=config,
distances=distances,
streams=streams,
rm=rm,
maxd=10)
rm.create_index_job()
if options.command:
return batch_command(options.command)
else:
compmake_console()
return 0
def dp_batch_main(config, parser):
""" Runs batch planning experiments from batch configuration files. """
parser.add_option("-o",
"--output",
default='out/dp-batch',
help="Output directory")
parser.add_option("-c",
"--command",
help="Command to pass to compmake for batch mode")
options, which = parser.parse()
if not which:
todo = config.sets.keys()
id_comb = 'all'
else:
todo = config.sets.expand_names(which)
id_comb = "+".join(sorted(todo))
logger.info('Batch sets to do: %s' % todo)
outdir = os.path.join(options.output, 'set-%s' % id_comb)
# Compmake storage for results
storage = os.path.join(outdir, 'compmake')
use_filesystem(storage)
read_rc_files()
for id_set in todo:
logger.info('Instantiating batch set %s' % id_set)
spec = config.sets[id_set]
try:
algos = config.algos.expand_names(spec['algorithms'])
testcases = config.testcases.expand_names(spec['testcases'])
comp_prefix('%s' % id_set)
b_outdir = os.path.join(outdir, id_set)
create_bench_jobs(config=config,
algos=algos,
testcases=testcases,
outdir=b_outdir)
except:
logger.error('Error while instantiating batch\n%s' % pformat(spec))
raise
if options.command:
return batch_command(options.command)
else:
compmake_console()
return 0
def plearn(config, parser):
""" Learn the diffeomorphisms in parallel. """
# parser.add_option("-i", "--id_image", help="ID image.", default='lena')
ncpus = multiprocessing.cpu_count()
parser.add_option("-n",
"--nthreads",
help="Number of threads",
type='int',
default=ncpus)
parser.add_option("-s",
"--streams",
help="Which streams to use.",
default="*")
parser.add_option("-i", "--comb", default="default")
parser.add_option("-l", "--learners", help="Learner config.", default="*")
parser.add_option("-o",
"--output",
help="Output directory",
default='out/dp-plearn/')
parser.add_option("-c",
"--command",
help="Command to pass to compmake for batch mode")
options = parser.parse_options()
nthreads = options.nthreads
learners = config.learners.expand_names(options.learners)
streams = config.streams.expand_names(options.streams)
id_comb = ",".join(streams) + "-" + ",".join(learners)
outdir = os.path.join(options.output, id_comb)
storage = os.path.join(outdir, 'compmake')
use_filesystem(storage)
read_rc_files()
rm = ReportManager(os.path.join(outdir, 'reports'))
jobs_plearn(config, rm, learners, streams, outdir, nthreads)
rm.create_index_job()
# Time and report the learning
comp(learning_times_plearn, outdir, learners, streams, nthreads)
if options.command:
return batch_command(options.command)
else:
compmake_console()
return 0
def dp_bench_main(config, parser): # @UnusedVariable
""" Runs a set of planning experiments. """
parser.add_option("-a",
"--algorithms",
default='*',
help="Comma-separated list of algorithms. Can use *.")
parser.add_option("-t",
"--testcases",
default='*',
help="Comma-separated list of algorithms. Can use *.")
parser.add_option("-o",
"--output",
default='out/dp-bench',
help="Output directory")
parser.add_option("-c",
"--command",
help="Command to pass to compmake for batch mode")
options = parser.parse_options()
algos = config.algos.expand_names(options.algorithms)
testcases = config.testcases.expand_names(options.testcases)
logger.info('Using %d algorithms: %s' % (len(algos), algos))
logger.info('Using %d testcases.' % (len(testcases)))
outdir = options.output
# Compmake storage for results
storage = os.path.join(outdir, 'compmake')
use_filesystem(storage)
read_rc_files()
create_bench_jobs(config=config,
algos=algos,
testcases=testcases,
outdir=outdir)
if options.command:
return batch_command(options.command)
else:
compmake_console()
return 0
def main():
outdir = 'test/repman'
storage = os.path.join(outdir, 'compmake')
use_filesystem(storage)
rm = ReportManager(outdir)
report = comp(make_rep1, 'TestReport3')
report2 = comp(make_rep1, 'TestReport4')
rm.add(report, 'rep3')
rm.add(report2, 'rep4')
rm.create_index_job()
read_rc_files()
compmake_console()
def main():
outdir = "test/repman"
storage = os.path.join(outdir, "compmake")
use_filesystem(storage)
rm = ReportManager(outdir)
report = comp(make_rep1, "TestReport3")
report2 = comp(make_rep1, "TestReport4")
rm.add(report, "rep3")
rm.add(report2, "rep4")
rm.create_index_job()
read_rc_files()
compmake_console()
def dp_batch_main(config, parser):
""" Runs batch planning experiments from batch configuration files. """
parser.add_option("-o", "--output", default='out/dp-batch',
help="Output directory")
parser.add_option("-c", "--command",
help="Command to pass to compmake for batch mode")
options, which = parser.parse()
if not which:
todo = config.sets.keys()
id_comb = 'all'
else:
todo = config.sets.expand_names(which)
id_comb = "+".join(sorted(todo))
logger.info('Batch sets to do: %s' % todo)
outdir = os.path.join(options.output, 'set-%s' % id_comb)
# Compmake storage for results
storage = os.path.join(outdir, 'compmake')
use_filesystem(storage)
read_rc_files()
for id_set in todo:
logger.info('Instantiating batch set %s' % id_set)
spec = config.sets[id_set]
try:
algos = config.algos.expand_names(spec['algorithms'])
testcases = config.testcases.expand_names(spec['testcases'])
comp_prefix('%s' % id_set)
b_outdir = os.path.join(outdir, id_set)
create_bench_jobs(config=config, algos=algos,
testcases=testcases, outdir=b_outdir)
except:
logger.error('Error while instantiating batch\n%s' % pformat(spec))
raise
if options.command:
return batch_command(options.command)
else:
compmake_console()
return 0
def uncert(config, parser):
parser.add_option("-S", "--dds", help="DDS sytem .")
parser.add_option("-c", "--command", \
help="Command to pass to compmake for batch mode")
parser.add_option("-o", "--output", help="Output directory", \
default='out/dp-precision/')
parser.add_option("-s", "--streams", help="Which streams to use.", \
default="*")
parser.add_option("-d", "--distances", default='L2,L2w', \
help="Distances id to use for comparing the diffeo systems")
parser.add_option("-l", "--length", default=9, type='int', \
help="Max length of test cases")
options = parser.parse_options()
dds = config.discdds.expand_names(options.dds)
streams = config.streams.expand_names(options.streams)
id_comb = ",".join(dds)
outdir = os.path.join(options.output, id_comb)
storage = os.path.join(outdir, 'compmake')
use_filesystem(storage)
read_rc_files()
rm = ReportManager(os.path.join(outdir, 'reports'))
max_delta = options.length
distances = config.distances.expand_names(options.distances)
store = create_stats_jobs(config, dds, streams, distances, max_delta, outdir)
records = comp(make_records, store)
report = comp(report_stats, records, dds, streams, distances)
r0 = comp(empty_report)
rm.add(report, 'main', id_dds='dds')
rm.add(r0, 'empty')
rm.create_index_job()
if options.command:
return batch_command(options.command)
else:
compmake_console()
return 0
def uncert(config, parser):
parser.add_option("-S", "--dds", help="DDS sytem .")
parser.add_option("-c", "--command", \
help="Command to pass to compmake for batch mode")
parser.add_option("-o", "--output", help="Output directory", \
default='out/dp-precision/')
parser.add_option("-s", "--streams", help="Which streams to use.", \
default="*")
parser.add_option("-d", "--distances", default='L2,L2w', \
help="Distances id to use for comparing the diffeo systems")
parser.add_option("-l", "--length", default=9, type='int', \
help="Max length of test cases")
options = parser.parse_options()
dds = config.discdds.expand_names(options.dds)
streams = config.streams.expand_names(options.streams)
id_comb = ",".join(dds)
outdir = os.path.join(options.output, id_comb)
storage = os.path.join(outdir, 'compmake')
use_filesystem(storage)
read_rc_files()
rm = ReportManager(os.path.join(outdir, 'reports'))
max_delta = options.length
distances = config.distances.expand_names(options.distances)
store = create_stats_jobs(config, dds, streams, distances, max_delta,
outdir)
records = comp(make_records, store)
report = comp(report_stats, records, dds, streams, distances)
r0 = comp(empty_report)
rm.add(report, 'main', id_dds='dds')
rm.add(r0, 'empty')
rm.create_index_job()
if options.command:
return batch_command(options.command)
else:
compmake_console()
return 0
def uncert(config, parser): # @UnusedVariable
parser.add_option("-s",
"--streams",
help="Which streams to use.",
default="*")
parser.add_option("-S", "--dds", help="DDS sytem .")
parser.add_option("-o",
"--output",
help="Output directory",
default='out/dp-uncert/')
parser.add_option("-c",
"--command",
help="Command to pass to compmake for batch mode")
options = parser.parse_options()
dds = config.discdds.expand_names(options.dds)
streams = config.streams.expand_names(options.streams)
id_comb = ",".join(dds) + "-" + ",".join(streams)
outdir = os.path.join(options.output, id_comb)
storage = os.path.join(outdir, 'compmake')
use_filesystem(storage)
read_rc_files()
rm = ReportManager(os.path.join(outdir, 'reports'))
max_delta = 9
store = create_uncert_stats_jobs(config, dds, streams, max_delta, outdir)
records = comp(make_records, store)
report = comp(report_uncert_stats, records, dds)
r0 = comp(empty_report)
rm.add(report, 'main', id_dds='dds')
rm.add(r0, 'empty')
rm.create_index_job()
if options.command:
return batch_command(options.command)
else:
compmake_console()
return 0
def dp_dist_stats(config, parser): #@UnusedVariable
""" Computes statistics for images distances for different plan steps. """
parser.add_option("-o", "--output", default='out/dp-dist-stats',
help="Output directory")
parser.add_option("-d", "--distances", default='*',
help="Comma-separated list of distances. Can use *.")
parser.add_option("-s", "--streams", default='*',
help="Comma-separated list of streams. Can use *.")
parser.add_option("-r", "--repeat", default=1, type='int',
help="Repeat many times.")
parser.add_option("-c", "--command",
help="Command to pass to compmake for batch mode")
options = parser.parse_options()
distances = natsorted(config.distances.expand_names(options.distances))
streams = natsorted(config.streams.expand_names(options.streams))
logger.info('Using distances: %s' % distances)
logger.info('Using streams: %s' % streams)
id_comb = ','.join(streams) + '-' + ','.join(distances)
outdir = os.path.join(options.output, id_comb)
storage = os.path.join(outdir, 'compmake')
use_filesystem(storage)
read_rc_files()
rm = ReportManager(os.path.join(outdir, "reports"))
create_diststats_jobs(config=config, distances=distances, streams=streams,
rm=rm, maxd=10)
rm.create_index_job()
if options.command:
return batch_command(options.command)
else:
compmake_console()
return 0
def plearn(config, parser):
""" Learn the diffeomorphisms in parallel. """
# parser.add_option("-i", "--id_image", help="ID image.", default='lena')
ncpus = multiprocessing.cpu_count()
parser.add_option("-n", "--nthreads", help="Number of threads",
type='int', default=ncpus)
parser.add_option("-s", "--streams", help="Which streams to use.",
default="*")
parser.add_option("-i", "--comb", default="default")
parser.add_option("-l", "--learners", help="Learner config.", default="*")
parser.add_option("-o", "--output", help="Output directory",
default='out/dp-plearn/')
parser.add_option("-c", "--command",
help="Command to pass to compmake for batch mode")
options = parser.parse_options()
nthreads = options.nthreads
learners = config.learners.expand_names(options.learners)
streams = config.streams.expand_names(options.streams)
id_comb = ",".join(streams) + "-" + ",".join(learners)
outdir = os.path.join(options.output, id_comb)
storage = os.path.join(outdir, 'compmake')
use_filesystem(storage)
read_rc_files()
rm = ReportManager(os.path.join(outdir, 'reports'))
jobs_plearn(config, rm, learners, streams, outdir, nthreads)
rm.create_index_job()
# Time and report the learning
comp(learning_times_plearn, outdir, learners, streams, nthreads)
if options.command:
return batch_command(options.command)
else:
compmake_console()
return 0
def uncert(config, parser): # @UnusedVariable
parser.add_option("-s", "--streams", help="Which streams to use.",
default="*")
parser.add_option("-S", "--dds", help="DDS sytem .")
parser.add_option("-o", "--output", help="Output directory",
default='out/dp-uncert/')
parser.add_option("-c", "--command",
help="Command to pass to compmake for batch mode")
options = parser.parse_options()
dds = config.discdds.expand_names(options.dds)
streams = config.streams.expand_names(options.streams)
id_comb = ",".join(dds) + "-" + ",".join(streams)
outdir = os.path.join(options.output, id_comb)
storage = os.path.join(outdir, 'compmake')
use_filesystem(storage)
read_rc_files()
rm = ReportManager(os.path.join(outdir, 'reports'))
max_delta = 9
store = create_uncert_stats_jobs(config, dds, streams, max_delta, outdir)
records = comp(make_records, store)
report = comp(report_uncert_stats, records, dds)
r0 = comp(empty_report)
rm.add(report, 'main', id_dds='dds')
rm.add(r0, 'empty')
rm.create_index_job()
if options.command:
return batch_command(options.command)
else:
compmake_console()
return 0
def dp_bench_main(config, parser): # @UnusedVariable
""" Runs a set of planning experiments. """
parser.add_option("-a", "--algorithms", default='*',
help="Comma-separated list of algorithms. Can use *.")
parser.add_option("-t", "--testcases", default='*',
help="Comma-separated list of algorithms. Can use *.")
parser.add_option("-o", "--output", default='out/dp-bench',
help="Output directory")
parser.add_option("-c", "--command",
help="Command to pass to compmake for batch mode")
options = parser.parse_options()
algos = config.algos.expand_names(options.algorithms)
testcases = config.testcases.expand_names(options.testcases)
logger.info('Using %d algorithms: %s' % (len(algos), algos))
logger.info('Using %d testcases.' % (len(testcases)))
outdir = options.output
# Compmake storage for results
storage = os.path.join(outdir, 'compmake')
use_filesystem(storage)
read_rc_files()
create_bench_jobs(config=config, algos=algos,
testcases=testcases, outdir=outdir)
if options.command:
return batch_command(options.command)
else:
compmake_console()
return 0
def go(self):
# check that if we have a parent who is a quickapp,
# then use its context
qapp_parent = self.get_qapp_parent()
if qapp_parent is not None:
# self.info('Found parent: %s' % qapp_parent)
qc = qapp_parent.child_context
self.define_jobs_context(qc)
return
else:
# self.info('Parent not found')
pass
# if False:
# import resource
# gbs = 5
# max_mem = long(gbs * 1000 * 1048576)
# resource.setrlimit(resource.RLIMIT_AS, (max_mem, -1))
# resource.setrlimit(resource.RLIMIT_DATA, (max_mem, -1))
options = self.get_options()
# if self.get_qapp_parent() is None:
# only do this if somebody didn't do it before
if not options.contracts:
msg = ('PyContracts disabled for speed. '
'Use --contracts to activate.')
self.logger.warning(msg)
contracts.disable_all()
output_dir = options.output
if options.reset:
if os.path.exists(output_dir):
self.logger.info('Removing output dir %r.' % output_dir)
try:
shutil.rmtree(output_dir)
except OSError as e:
# Directory not empty -- common enough on NFS filesystems
# print('errno: %r' % e.errno)
if e.errno == 39:
pass
else:
raise
# Compmake storage for results
storage = os.path.join(output_dir, 'compmake')
logger.debug('Creating storage in %s (compress = %s)' %
(storage, options.compress))
db = StorageFilesystem(storage, compress=options.compress)
currently_executing = ['root']
# The original Compmake context
oc = Context(db=db, currently_executing=currently_executing)
# Our wrapper
qc = CompmakeContext(cc=oc,
parent=None,
qapp=self,
job_prefix=None,
output_dir=output_dir)
read_rc_files(oc)
original = oc.get_comp_prefix()
self.define_jobs_context(qc)
oc.comp_prefix(original)
merged = context_get_merge_data(qc)
# Only create the index job if we have reports defined
# or some branched context (which might create reports)
has_reports = len(qc.get_report_manager().allreports) > 0
has_branched = qc.has_branched()
if has_reports or has_branched:
# self.info('Creating reports')
oc.comp_dynamic(_dynreports_create_index, merged)
else:
pass
# self.info('Not creating reports.')
ndefined = len(oc.get_jobs_defined_in_this_session())
if ndefined == 0:
# self.comp was never called
msg = 'No jobs defined.'
raise ValueError(msg)
else:
if options.console:
oc.compmake_console()
return 0
else:
cq = CacheQueryDB(oc.get_compmake_db())
targets = cq.all_jobs()
todo, done, ready = cq.list_todo_targets(targets)
if not todo and options.command is None:
msg = "Note: there is nothing for me to do. "
msg += '\n(Jobs todo: %s done: %s ready: %s)' % (
len(todo), len(done), len(ready))
msg += """\
This application uses a cache system for the results.
This means that if you call it second time with the same arguments,
and if you do not change any input, it will not do anything."""
self.warn(msg)
return 0
if options.command is None:
command = 'make recurse=1'
else:
command = options.command
try:
_ = oc.batch_command(command)
# print('qapp: ret0 = %s' % ret0)
except CommandFailed:
# print('qapp: CommandFailed')
ret = QUICKAPP_COMPUTATION_ERROR
except ShellExitRequested:
# print('qapp: ShellExitRequested')
ret = 0
else:
# print('qapp: else ret = 0')
ret = 0
return ret
def pixlearn(config, parser):
parser.add_option("-n", "--nthreads", help="Number of threads",
type='int', default='4')
parser.add_option("--distribute", type='str', default='random',
help="Strategy to distribute sensles to threads")
parser.add_option("-s", "--id_stream", help="Which streams to use.",
default="*")
parser.add_option("-o", "--output", help="Output directory",
default='out/dp-pixlearn/')
parser.add_option("-l", "--id_learner", help="Learner config.", default="*")
parser.add_option("-c", "--command",
help="Command to pass to compmake for batch mode")
options = parser.parse_options()
nthreads = options.nthreads
id_learner = config.learners.expand_names(options.id_learner)
id_stream = config.streams.expand_names(options.id_stream)
id_comb = ",".join(id_stream) + "-" + ",".join(id_learner)
outdir = os.path.join(options.output, id_comb)
storage = os.path.join(outdir, 'compmake')
use_filesystem(storage)
read_rc_files()
rm = ReportManager(os.path.join(outdir, 'reports'))
pdb.set_trace()
if options.distribute == 'random':
max_nsensels = 40 * 30
# Generate a list with range of all indexes and assign them to threads
all_indicies = np.array(range(max_nsensels))
dist = np.random.randint(nthreads, size=max_nsensels)
sensel_indexes = []
for i in range(nthreads):
sensel_indexes.append(all_indicies[dist == i])
if options.distribute == 'demo4':
sensel_indexes = [[0, 1, 2, 3,
40, 41, 42, 43,
80, 81, 82, 83,
120, 121, 122, 123],
[340, 341, 342, 343,
380, 381, 382, 383,
420, 421, 422, 423,
460, 461, 462, 463],
[650, 651, 652, 653,
690, 691, 692, 693,
730, 731, 732, 733,
770, 771, 772, 773],
[1076, 1077, 1078, 1079,
1116, 1117, 1118, 1119,
1156, 1157, 1158, 1159,
1196, 1197, 1198, 1199]]
if len(id_learner) > 1 or len(id_stream) > 1:
logger.warning('learners and streams after index 0 will be ignored')
id_learner = id_learner[0]
id_stream = id_stream[0]
commands = [[256, 0, 0], [-256, 0, 0]]
states = [[100]]
# # Parallel part of code
# Initiate parallel learning
group = []
for i in range(nthreads):
estimator_i = comp(sensel_group_learn, config, id_learner, id_stream,
sensel_indexes[i])
group.append(estimator_i)
diffeo_system_i = comp(estimator_summarize, estimator_i,
commands, states, 'diffeo' + str(i))
estimator_report = comp(report_estimator, 'estimator' + str(i), estimator_i)
rm.add(estimator_report, 'estimator' + str(i), id_learner=id_learner,
id_stream=id_stream)
diffeo_report = comp(report_dds, 'diffeo' + str(i), diffeo_system_i)
rm.add(diffeo_report, 'diffeo' + str(i), id_learner=id_learner,
id_stream=id_stream)
estimator_main = comp(join_estimators, group)
main_system = comp(estimator_summarize, estimator_main,
commands, states, 'diffeo' + str(i))
diffeo_report = comp(report_dds, 'dds-%s-%s' % (id_stream, id_learner),
main_system,
job_id='learn-%s-%s-summarize-report' % (id_stream, id_learner))
rm.add(comp(empty_report), 'empty')
rm.add(diffeo_report, 'dds', id_learner=id_learner, id_stream=id_stream)
rm.create_index_job()
if options.command:
# return batch_command(options.command)
batch_command(options.command)
else:
compmake_console()
def idealize_uncert(config, parser):
'''
Assumes a constant displacement over the whole sensor domain
'''
parser.add_option("-S", "--dds", help="DDS sytem .")
parser.add_option("-c", "--command", \
help="Command to pass to compmake for batch mode")
parser.add_option("-o", "--output", help="Output directory", \
default='out/idealized-dds/')
options = parser.parse_options()
id_discdds = options.dds
dds = config.discdds.instance(id_discdds)
outdir = os.path.join(options.output, id_discdds)
storage = os.path.join(outdir, 'compmake')
use_filesystem(storage)
read_rc_files()
#
rm = ReportManager(os.path.join(outdir, 'reports'))
# Ideal
id_iu_discdds = 'iu-' + id_discdds
iu_dds = comp(_idealize_uncert, dds, job_id='idealize_uncert')
comp(save_results, id_iu_discdds, outdir, iu_dds)
diffeo_report = comp(report_dds, 'iu_dds-%s' % id_discdds, iu_dds)
rm.add(diffeo_report, 'iu-dds', id_learner='idealized-uncertainty')
# Relative
id_uur_discdds = 'uur-' + id_discdds
dds_copyr = copy.copy(dds)
uur_dds = comp(_update_uncert, dds_copyr, length_score_norm_relative,
job_id='update_uncert_relative')
comp(save_results, id_uur_discdds, outdir, uur_dds,
job_id='update_uncert_relative_save')
diffeo_report = comp(report_dds, 'uur-dds-%s' % id_discdds, uur_dds,
job_id='update_uncert_relative_report')
rm.add(diffeo_report, 'uur-dds', id_learner='updated-uncertainty-uur')
# Absolute
dds_copya = copy.copy(dds)
id_uua_discdds = 'uua-' + id_discdds
uua_dds = comp(_update_uncert, dds_copya, length_score_norm,
job_id='update_uncert_absolute')
comp(save_results, id_uua_discdds, outdir, uua_dds,
job_id='update_uncert_absolute_save')
diffeo_report = comp(report_dds, 'uua-dds-%s' % id_discdds, uua_dds,
job_id='update_uncert_absolute_report')
rm.add(diffeo_report, 'uua-dds', id_learner='updated-uncertainty-uua')
rm.create_index_job()
if options.command:
return batch_command(options.command)
else:
# pdb.set_trace()
compmake_console()
return 0
def idealize_uncert(config, parser):
'''
Assumes a constant displacement over the whole sensor domain
'''
parser.add_option("-S", "--dds", help="DDS sytem .")
parser.add_option("-c", "--command", \
help="Command to pass to compmake for batch mode")
parser.add_option("-o", "--output", help="Output directory", \
default='out/idealized-dds/')
options = parser.parse_options()
id_discdds = options.dds
dds = config.discdds.instance(id_discdds)
outdir = os.path.join(options.output, id_discdds)
storage = os.path.join(outdir, 'compmake')
use_filesystem(storage)
read_rc_files()
#
rm = ReportManager(os.path.join(outdir, 'reports'))
# Ideal
id_iu_discdds = 'iu-' + id_discdds
iu_dds = comp(_idealize_uncert, dds, job_id='idealize_uncert')
comp(save_results, id_iu_discdds, outdir, iu_dds)
diffeo_report = comp(report_dds, 'iu_dds-%s' % id_discdds, iu_dds)
rm.add(diffeo_report, 'iu-dds', id_learner='idealized-uncertainty')
# Relative
id_uur_discdds = 'uur-' + id_discdds
dds_copyr = copy.copy(dds)
uur_dds = comp(_update_uncert,
dds_copyr,
length_score_norm_relative,
job_id='update_uncert_relative')
comp(save_results,
id_uur_discdds,
outdir,
uur_dds,
job_id='update_uncert_relative_save')
diffeo_report = comp(report_dds,
'uur-dds-%s' % id_discdds,
uur_dds,
job_id='update_uncert_relative_report')
rm.add(diffeo_report, 'uur-dds', id_learner='updated-uncertainty-uur')
# Absolute
dds_copya = copy.copy(dds)
id_uua_discdds = 'uua-' + id_discdds
uua_dds = comp(_update_uncert,
dds_copya,
length_score_norm,
job_id='update_uncert_absolute')
comp(save_results,
id_uua_discdds,
outdir,
uua_dds,
job_id='update_uncert_absolute_save')
diffeo_report = comp(report_dds,
'uua-dds-%s' % id_discdds,
uua_dds,
job_id='update_uncert_absolute_report')
rm.add(diffeo_report, 'uua-dds', id_learner='updated-uncertainty-uua')
rm.create_index_job()
if options.command:
return batch_command(options.command)
else:
# pdb.set_trace()
compmake_console()
return 0
def rlearn(config, parser): #@UnusedVariable
t0 = time.time()
""" Displays the learned DDS """
parser.add_option("-n",
"--nthreads",
help="Number of threads",
type='int',
default='4')
parser.add_option("-r",
"--nrefine",
help="Number of time to refine learning",
type='int',
default='2')
parser.add_option("-s",
"--streams",
help="Which streams to use.",
default="*")
parser.add_option("-i", "--comb", default="default")
parser.add_option("-l", "--learners", help="Learner config.", default="*")
parser.add_option("-o",
"--output",
help="Output directory",
default='out/dp-rlearn/')
parser.add_option(
"--sensels",
default=None,
help="Sensel indices to use for debuging refining module")
parser.add_option("-c",
"--command",
help="Command to pass to compmake for batch mode")
parser.add_option("--show",
default=None,
help="Name of learners to report")
options = parser.parse_options()
if options.show is not None:
diffeomorphism2d_continuous.make_report(options.show.split(','))
sys.exit()
nthreads = options.nthreads
nrefine = options.nrefine
learners = config.learners.expand_names(options.learners)
streams = config.streams.expand_names(options.streams)
if len(learners) > 1:
logger.warn('Multiple learners are not supported for now')
if len(streams) > 1:
logger.warn('Multiple streams are not supported for now')
id_comb = ",".join(streams) + "-" + ",".join(learners)
outdir = os.path.join(options.output, id_comb)
storage = os.path.join(outdir, 'compmake')
use_filesystem(storage)
read_rc_files()
rm = ReportManager(os.path.join(outdir, 'reports'))
jobs_rlearn(config, rm, learners, streams, outdir, nthreads, nrefine,
options.sensels)
# Time and report the learning
comp(learning_times_rlearn, outdir, learners, streams, nthreads, nrefine)
rm.create_index_job()
if options.command:
return batch_command(options.command)
else:
compmake_console()
return 0
logger.info("Done after time: " + str(time.time() - t0) + ' seconds')
def go(self):
# check that if we have a parent who is a quickapp,
# then use its context
qapp_parent = self.get_qapp_parent()
if qapp_parent is not None:
# self.info('Found parent: %s' % qapp_parent)
context = qapp_parent.child_context
self.define_jobs_context(context)
return
else:
# self.info('Parent not found')
pass
if False:
import resource
gbs = 5
max_mem = long(gbs * 1000 * 1048576L)
resource.setrlimit(resource.RLIMIT_AS, (max_mem, -1))
resource.setrlimit(resource.RLIMIT_DATA, (max_mem, -1))
options = self.get_options()
if self.get_qapp_parent() is None:
# only do this if somebody didn't do it before
if not options.contracts:
msg = 'PyContracts disabled for speed. Use --contracts to activate.'
self.logger.warning(msg)
contracts.disable_all()
warnings.warn('removed configuration below') # (start)
output_dir = options.output
# Compmake storage for results
storage = os.path.join(output_dir, 'compmake')
sf = StorageFilesystem(storage, compress=True)
# sf = StorageFilesystem2(directory)
# sf = MemoryCache(sf)
set_compmake_db(sf)
# use_filesystem(storage)
read_rc_files()
context = CompmakeContext(parent=None, qapp=self, job_prefix=None,
output_dir=output_dir)
self.context = context
original = get_comp_prefix()
self.define_jobs_context(context)
comp_prefix(original)
context.finalize_jobs()
if context.n_comp_invocations == 0:
# self.comp was never called
msg = 'No jobs defined.'
raise ValueError(msg)
else:
if not options.console:
batch_result = batch_command(options.command)
if isinstance(batch_result, str):
ret = QUICKAPP_COMPUTATION_ERROR
elif isinstance(batch_result, int):
if batch_result == 0:
ret = 0
else:
# xxx: discarded information
ret = QUICKAPP_COMPUTATION_ERROR
else:
assert False
return ret
else:
compmake_console()
return 0
def dp_predstats_main(config, parser):
parser.add_option("-o",
"--output",
default='out/dp-pred-stats',
help="Output directory")
parser.add_option("-d",
"--distances",
default='*',
help="Comma-separated list of distances. Can use *.")
parser.add_option("-S",
"--dds",
help="Comma-separated list of diffeosystems.")
parser.add_option("-s",
"--streams",
help="Comma-separated list of streams.")
parser.add_option("-c",
"--command",
help="Command to pass to compmake for batch mode")
options = parser.parse_options()
if not options.streams:
msg = 'Please specify streams using -s.'
raise UserError(msg)
if not options.dds:
msg = 'Please specify which discdds to use.'
raise UserError(msg)
distances = config.distances.expand_names(options.distances)
streams = config.streams.expand_names(options.streams)
dds = config.streams.expand_names(options.dds)
logger.info('Using distances: %s' % distances)
logger.info('Using streams: %s' % streams)
logger.info('Using discdds: %s' % dds)
outdir = '%s/%s' % (options.output, options.dds)
storage = os.path.join(outdir, 'compmake')
use_filesystem(storage)
read_rc_files()
rm = ReportManager(os.path.join(outdir, "reports"))
# for id_discdds in dds:
create_predstats_jobs(config=config,
distances=distances,
id_discdds=dds,
streams=streams,
rm=rm,
maxd=10)
rm.create_index_job()
if options.command:
return batch_command(options.command)
else:
compmake_console()
return 0
def go(self):
# check that if we have a parent who is a quickapp,
# then use its context
qapp_parent = self.get_qapp_parent()
if qapp_parent is not None:
# self.info('Found parent: %s' % qapp_parent)
qc = qapp_parent.child_context
self.define_jobs_context(qc)
return
else:
# self.info('Parent not found')
pass
if False:
import resource
gbs = 5
max_mem = long(gbs * 1000 * 1048576L)
resource.setrlimit(resource.RLIMIT_AS, (max_mem, -1))
resource.setrlimit(resource.RLIMIT_DATA, (max_mem, -1))
options = self.get_options()
if self.get_qapp_parent() is None:
# only do this if somebody didn't do it before
if not options.contracts:
msg = ('PyContracts disabled for speed. '
'Use --contracts to activate.')
self.logger.warning(msg)
contracts.disable_all()
output_dir = options.output
if options.reset:
if os.path.exists(output_dir):
self.logger.info('Removing output dir %r.' % output_dir)
shutil.rmtree(output_dir)
# Compmake storage for results
storage = os.path.join(output_dir, 'compmake')
db = StorageFilesystem(storage, compress=True)
currently_executing = ['root']
# The original Compmake context
oc = Context(db=db, currently_executing=currently_executing)
# Our wrapper
qc = CompmakeContext(cc=oc,
parent=None, qapp=self, job_prefix=None,
output_dir=output_dir)
read_rc_files(oc)
original = oc.get_comp_prefix()
self.define_jobs_context(qc)
oc.comp_prefix(original)
merged = context_get_merge_data(qc)
# Only create the index job if we have reports defined
# or some branched context (which might create reports)
has_reports = len(qc.get_report_manager().allreports) > 0
has_branched = qc.has_branched()
if has_reports or has_branched:
self.info('Creating reports')
oc.comp_dynamic(_dynreports_create_index, merged)
else:
self.info('Not creating reports.')
ndefined = len(oc.get_jobs_defined_in_this_session())
if ndefined == 0:
# self.comp was never called
msg = 'No jobs defined.'
raise ValueError(msg)
else:
if not options.console:
try:
oc.batch_command(options.command)
except CommandFailed:
ret = QUICKAPP_COMPUTATION_ERROR
else:
ret = 0
return ret
else:
oc.compmake_console()
return 0
