# NB : Hits coordinates have not been corrected for cropping here ! Done in the next for loop
# Loop over final hits to generate ROI
for hit in Hits_AfterNMS:
#print hit
if Bool_SearchRoi: # Add offset of search ROI
hit['BBox'] = (hit['BBox'][0] + dX, hit['BBox'][1] + dY,
hit['BBox'][2], hit['BBox'][3])
# Create detected ROI
roi = Roi(*hit['BBox'])
roi.setName(hit['TemplateName'])
roi.setPosition(i) # set ROI Z-position
#roi.setProperty("class", hit["TemplateName"])
image.setSlice(i)
image.setRoi(roi)
if add_roi:
rm.add(
None, roi, i
) # Trick to be able to set Z-position when less images than the number of ROI. Here i is an digit index before the Roi Name
# Show All ROI + Associate ROI to slices
rm.runCommand("Associate", "true")
rm.runCommand("Show All with labels")
IJ.selectWindow(ImageName) # does not work always
## Stop time here (we dont benchmark display time)
Stop = time.clock()
Elapsed = Stop - Start # in seconds
ListTime.append(Elapsed)
## Loop over final hits to generate ROI, result table... ###
for hit in Hits_AfterNMS:
if Bool_SearchRoi: # Add the offset of the search ROI
hit['BBox'] = (hit['BBox'][0] + dX, hit['BBox'][1] + dY,
hit['BBox'][2], hit['BBox'][3])
if add_roi:
roi = Roi(*hit['BBox'])
roi.setName(hit['TemplateName'])
roi.setPosition(i + 1) # set slice position
rm.add(
None, roi, i + 1
) # Trick to be able to set slice when less images than ROI. Here i is an digit index before the Roi Name
if show_table:
Xcorner, Ycorner = hit['BBox'][0], hit['BBox'][1]
Xcenter, Ycenter = CornerToCenter(Xcorner, Ycorner, hit['BBox'][2],
hit['BBox'][3])
Dico = {
'Image': ImName,
'Template': hit['TemplateName'],
'Xcorner': Xcorner,
'Ycorner': Ycorner,
'Xcenter': Xcenter,
