def test_cover_r(self):
self.args.tumor_files = ['test/test_normal_1.txt']
self.args.non_tumor_files = ['test/test_normal_1.txt']
self.args.r = 1.5
patient = Patient(self.args, 0)
# mean is 2 for C1.
self.assertTrue(patient.covers(3.01, 'C1'))
self.assertTrue(patient.covers(4, 'C1'))
self.assertTrue(patient.covers(100, 'C1'))
self.assertFalse(patient.covers(0, 'C1'))
self.assertFalse(patient.covers(1, 'C1'))
self.assertFalse(patient.covers(2.5, 'C1'))
self.assertFalse(patient.covers(3, 'C1'))
# mean is 1.25 for C2.
self.assertTrue(patient.covers(1.25 * 1.5 + 0.01, 'C2'))
self.assertTrue(patient.covers(4, 'C2'))
self.assertTrue(patient.covers(100, 'C2'))
self.assertFalse(patient.covers(0, 'C2'))
self.assertFalse(patient.covers(1, 'C2'))
self.assertFalse(patient.covers(1.25, 'C2'))
# mean is 3 for C3.
self.assertTrue(patient.covers(4.6, 'C3'))
self.assertTrue(patient.covers(5, 'C3'))
self.assertTrue(patient.covers(100, 'C3'))
self.assertFalse(patient.covers(0, 'C3'))
self.assertFalse(patient.covers(1, 'C3'))
self.assertFalse(patient.covers(1.25, 'C3'))
self.assertFalse(patient.covers(3, 'C3'))
self.assertFalse(patient.covers(4.5, 'C3'))
