def load(cls, path):
# General
try:
with zipfile.ZipFile(path, "r") as zip:
namelist = zip.namelist()
# Load Settings
settings_path = next(name for name in namelist
if str.endswith(name, ".settings"))
settings = None
try:
settings = ProjectPreferences.from_json_file(
zip.extract(settings_path))
except OSError:
print("[1/1] Loading of the settings file %s failed" %
settings_path)
else:
print("[1/1] Successfully loaded the settings file %s" %
settings_path)
# Load Patients
patients_path = [
name for name in namelist
if str.endswith(name, ".patient")
]
patients = []
for i, patient_path in enumerate(patients_path):
try:
patients.append(
Patient.from_json_file(zip.extract(patient_path)))
except OSError:
print(
"[{0}/{1}] Loading of the patient file {2} failed".
format(i + 1, len(patients_path), patient_path))
else:
print(
"[{0}/{1}] Successfully loaded the patient file {2}"
.format(i + 1, len(patients_path), patient_path))
patients = [
Patient.from_json_file(zip.extract(patient))
for patient in patients_path
]
# Load Groups
groups_path = [
name for name in namelist if str.endswith(name, ".group")
]
groups = []
for i, group_path in enumerate(groups_path):
try:
groups.append(
Group.from_json_file(zip.extract(group_path),
patients))
except OSError:
print("[{0}/{1}] Loading of the group file {2} failed".
format(i + 1, len(groups_path), group_path))
else:
print(
"[{0}/{1}] Successfully loaded the group file {2}".
format(i + 1, len(groups_path), group_path))
# Load Protocols
protocols_path = [
name for name in namelist if str.endswith(name, ".prov")
]
protocols = []
for i, protocol_path in enumerate(protocols_path):
try:
protocols.append(
Protocol.from_json_file(
zip.extract(protocol_path)))
except OSError:
print(
"[{0}/{1}] Loading of the protocol file {2} failed"
.format(i + 1, len(protocols_path), protocol_path))
else:
print(
"[{0}/{1}] Successfully loaded the protocol file {2}"
.format(i + 1, len(protocols_path), protocol_path))
# Load Datasets
datasets_path = [
name for name in namelist
if str.endswith(name, ".dataset")
]
datasets = []
for i, dataset_path in enumerate(datasets_path):
try:
datasets.append(
Dataset.from_json_file(zip.extract(dataset_path),
protocols, patients))
except OSError:
print(
"[{0}/{1}] Loading of the dataset file {2} failed".
format(i + 1, len(datasets_path), dataset_path))
else:
print(
"[{0}/{1}] Successfully loaded the dataset file {2}"
.format(i + 1, len(datasets_path), dataset_path))
# Load Visualizations
visualizations_path = [
name for name in namelist
if str.endswith(name, ".visualization")
]
visualizations = []
for i, visualization_path in enumerate(visualizations_path):
try:
visualizations.append(
Visualization.from_json_file(
zip.extract(visualization_path), patients,
datasets))
except OSError:
print(
"[{0}/{1}] Loading of the visualization file {2} failed"
.format(i + 1, len(visualizations_path),
visualization_path))
else:
print(
"[{0}/{1}] Successfully loaded the visualization file {2}"
.format(i + 1, len(visualizations_path),
visualization_path))
print("Successfully loaded the project %s " % path)
return cls(settings, patients, groups, protocols, datasets,
visualizations)
except OSError:
print("Loading of the project %s failed" % path)
