def initData():
"""Load data and mappings from Raw data files and mapping files"""
Patient.generate()
Patient.load()
VitalSigns.load()
Lab.load()
Procedure.load()
Immunization.load()
FamilyHistory.load()
SocialHistory.load()
Condition.load()
Med.load()
Refill.load()
Document.load()
Allergy.load()
ClinicalNote.load()
Practitioner.load()
# Show progress with '.' characters
print ".",
sys.stdout.flush()
parser.exit(0,"\nDone writing %d patient RDF files!"%len(Patient.mpi))
# Write all patient RDF files out to a directory
if args.writeIndivo:
print "Writing files to %s:"%args.writeIndivo
initData()
path = args.writeIndivo
if not os.path.exists(path):
parser.error("Invalid path: '%s'.Path must already exist."%path)
if not path.endswith('/'): path = path+'/' # Works with DOS? Who cares??
import indivo
for pid in Patient.mpi:
f = open(path+"p%s.py"%pid,'w')
indivo.writePatientFile(f, pid)
f.close()
# Show progress with '.' characters
print ".",
sys.stdout.flush()
parser.exit(0,"\nDone writing %d patient RDF files!"%len(Patient.mpi))
# Generate a new patients data file, re-randomizing old names, dob, etc:
Patient.generate()
parser.exit(0,"Patient data written to: %s\n"%PATIENTS_FILE)
parser.error("No arguments given")
# Show progress with '.' characters
print ".",
sys.stdout.flush()
parser.exit(0,"\nDone writing %d patient RDF files!"%len(Patient.mpi))
# Write all patient RDF files out to a directory
if args.writeIndivo:
print "Writing files to %s:"%args.writeIndivo
initData()
path = args.writeIndivo
if not os.path.exists(path):
parser.error("Invalid path: '%s'.Path must already exist."%path)
if not path.endswith('/'): path = path+'/' # Works with DOS? Who cares??
import indivo
for pid in Patient.mpi:
f = open(path+"p%s.py"%pid,'w')
indivo.writePatientFile(f, pid)
f.close()
# Show progress with '.' characters
print ".",
sys.stdout.flush()
parser.exit(0,"\nDone writing %d patient RDF files!"%len(Patient.mpi))
# Generate a new patients data file, re-randomizing old names, dob, etc:
Patient.generate()
parser.exit(0,"Patient data written to: %s\n"%PATIENTS_FILE)
parser.error("No arguments given")
