def get_citation_information(self):
cite_info1 = CitationInformation()
cite_info1.name = 'citation1'
cite_info1.description = \
("TomoPhantom is a software package to generate 2D-4D analytical phantoms and their Radon transforms for various testing purposes.")
cite_info1.bibtex = \
("@article{kazantsevTP2018,\n" +
"title={TomoPhantom, a software package to generate 2D-4D analytical phantoms for CT image reconstruction algorithm benchmarks},\n" +
"author={Daniil and Kazantsev, Valery and Pickalov, Srikanth and Nagella, Edoardo and Pasca, Philip and Withers},\n" +
"journal={Software X},\n" +
"volume={7},\n" +
"number={--},\n" +
"pages={150--155},\n" +
"year={2018},\n" +
"publisher={Elsevier}\n" +
"}")
cite_info1.endnote = \
("%0 Journal Article\n" +
"%T TomoPhantom, a software package to generate 2D-4D analytical phantoms for CT image reconstruction algorithm benchmarks\n" +
"%A Kazantsev, Daniil\n" +
"%A Pickalov, Valery\n" +
"%A Nagella, Srikanth\n" +
"%A Pasca, Edoardo\n" +
"%A Withers, Philip\n" +
"%J Software X\n" +
"%V 7\n" +
"%N --\n" +
"%P 150--155\n" +
"%@ --\n" +
"%D 2018\n" +
"%I Elsevier\n")
cite_info1.doi = "doi:10.1016/j.softx.2018.05.003"
return [cite_info1]
def get_citation_information(self):
cite_info = CitationInformation()
cite_info.description = \
("An algorithm from the TomoPy framework is used to perform the \
reconstruction in this processing pipeline" )
cite_info.bibtex = \
("@article{gursoy2014tomopy,\n" +
"title={TomoPy: a framework for the analysis of synchrotron,\n" +
"tomographic data},\n" +
"author={G{\"u}rsoy, Doga and De Carlo, Francesco and Xiao,\n" +
"Xianghui and Jacobsen, Chris},\n" +
"journal={Journal of synchrotron radiation},\n" +
"volume={21},\n" +
"number={5},\n" +
"pages={1188--1193},\n" +
"year={2014},\n" +
"publisher={International Union of Crystallography}\n" +
"}")
cite_info.endnote = \
("%0 Journal Article\n" +
"%T TomoPy: a framework for the analysis of synchrotron\n" +
"tomographic data\n" +
"%A Gursoy, Doga\n" +
"%A De Carlo, Francesco" +
"%A Xiao, Xianghui" +
"%A Jacobsen, Chris" +
"%J Journal of synchrotron radiation" +
"%V 21" +
"%N 5" +
"%P 1188-1193" +
"%@ 1600-5775" +
"%D 2014" +
"%I International Union of Crystallography")
cite_info.doi = "doi: 10.1107/S1600577514013939"
return cite_info
def get_citation_information(self):
cite_info = CitationInformation()
cite_info.description = \
("The filter built is based on the Fresnel propagator")
cite_info.bibtex = ()
cite_info.doi = " "
return cite_info
def get_citation_information(self):
cite_info1 = CitationInformation()
cite_info1.name = 'citation1'
cite_info1.description = \
("First-order optimisation algorithm for linear inverse problems.")
cite_info1.bibtex = \
("@article{beck2009,\n" +
"title={A fast iterative shrinkage-thresholding algorithm for linear inverse problems},\n" +
"author={Amir and Beck, Mark and Teboulle},\n" +
"journal={SIAM Journal on Imaging Sciences},\n" +
"volume={2},\n" +
"number={1},\n" +
"pages={183--202},\n" +
"year={2009},\n" +
"publisher={SIAM}\n" +
"}")
cite_info1.endnote = \
("%0 Journal Article\n" +
"%T A fast iterative shrinkage-thresholding algorithm for linear inverse problems\n" +
"%A Beck, Amir\n" +
"%A Teboulle, Mark\n" +
"%J SIAM Journal on Imaging Sciences\n" +
"%V 2\n" +
"%N 1\n" +
"%P 183--202\n" +
"%@ --\n" +
"%D 2009\n" +
"%I SIAM\n")
cite_info1.doi = "doi: "
return cite_info1
def get_citation_information(self):
cite_info = CitationInformation()
cite_info.description = \
("The ring artefact removal algorithm used in this processing \
chain is taken from this work." )
cite_info.bibtex = \
("@article{raven1998numerical,\n" +
"title={Numerical removal of ring artifacts in \
microtomography},\n" +
"author={Raven, Carsten},\n" +
"journal={Review of scientific instruments},\n" +
"volume={69},\n" +
"number={8},\n" +
"pages={2978--2980},\n" +
"year={1998},\n" +
"publisher={AIP Publishing}\n" +
"}")
cite_info.endnote = \
("%0 Journal Article\n" +
"%T Numerical removal of ring artifacts in microtomography\n" +
"%A Raven, Carsten\n" +
"%J Review of scientific instruments\n" +
"%V 69\n" +
"%N 8\n" +
"%P 2978-2980\n" +
"%@ 0034-6748\n" +
"%D 1998\n" +
"%I AIP Publishing")
cite_info.doi = "doi: 10.1063/1.1149043"
return cite_info
def get_citation_information(self):
cite_info = CitationInformation()
cite_info.description = \
("The center of rotation for this reconstruction was calculated " +
"automatically using the method described in this work")
cite_info.bibtex = \
("@article{vo2014reliable,\n" +
"title={Reliable method for calculating the center of rotation " +
"in parallel-beam tomography},\n" +
"author={Vo, Nghia T and Drakopoulos, Michael and Atwood, " +
"Robert C and Reinhard, Christina},\n" +
"journal={Optics Express},\n" +
"volume={22},\n" +
"number={16},\n" +
"pages={19078--19086},\n" +
"year={2014},\n" +
"publisher={Optical Society of America}\n" +
"}")
cite_info.endnote = \
("%0 Journal Article\n" +
"%T Reliable method for calculating the center of rotation in " +
"parallel-beam tomography\n" +
"%A Vo, Nghia T\n" +
"%A Drakopoulos, Michael\n" +
"%A Atwood, Robert C\n" +
"%A Reinhard, Christina\n" +
"%J Optics Express\n" +
"%V 22\n" +
"%N 16\n" +
"%P 19078-19086\n" +
"%@ 1094-4087\n" +
"%D 2014\n" +
"%I Optical Society of America")
cite_info.doi = "http://dx.doi.org/10.1364/OE.22.019078"
return cite_info
def get_citation_information(self):
cite_info = CitationInformation()
cite_info.description = \
("The reconstruction performed in this processing " +
"chain is derived from this work.")
cite_info.bibtex = \
("@article{laurentini1994visual," +
"title={The visual hull concept for silhouette-based image understanding}," +
"author={Laurentini, Aldo}," +
"journal={IEEE Transactions on pattern analysis and machine intelligence}," +
"volume={16}," +
"number={2}," +
"pages={150--162}," +
"year={1994}," +
"publisher={IEEE}" +
"}")
cite_info.endnote = \
("%0 Journal Article" +
"%T The visual hull concept for silhouette-based image understanding" +
"%A Laurentini, Aldo" +
"%J IEEE Transactions on pattern analysis and machine intelligence" +
"%V 16" +
"%N 2" +
"%P 150-162" +
"%@ 0162-8828" +
"%D 1994" +
"%I IEEE")
cite_info.doi = "http://dx.doi.org/10.1109/34.273735"
return cite_info
def get_citation_information(self):
cite_info1 = CitationInformation()
cite_info1.name = 'citation1'
cite_info1.description = \
("First-order optimisation algorithm for linear inverse problems.")
cite_info1.bibtex = \
("@article{beck2009,\n" +
"title={A fast iterative shrinkage-thresholding algorithm for linear inverse problems},\n" +
"author={Amir and Beck, Mark and Teboulle},\n" +
"journal={SIAM Journal on Imaging Sciences},\n" +
"volume={2},\n" +
"number={1},\n" +
"pages={183--202},\n" +
"year={2009},\n" +
"publisher={SIAM}\n" +
"}")
cite_info1.endnote = \
("%0 Journal Article\n" +
"%T A fast iterative shrinkage-thresholding algorithm for linear inverse problems\n" +
"%A Beck, Amir\n" +
"%A Teboulle, Mark\n" +
"%J SIAM Journal on Imaging Sciences\n" +
"%V 2\n" +
"%N 1\n" +
"%P 183--202\n" +
"%@ --\n" +
"%D 2009\n" +
"%I SIAM\n")
cite_info1.doi = "doi: "
return cite_info1
def get_citation_information(self):
cite_info = CitationInformation()
cite_info.description = \
("The ring artefact removal algorithm used in this processing\n"
"chain is taken from this work.")
cite_info.bibtex = \
("@inproceedings{titarenko2010regularization,\n" +
"title={Regularization methods for inverse problems in\n" +
"X-ray tomography},\n" +
"author={Titarenko, Valeriy and Bradley, Robert and Martin,\n" +
"Christopher and Withers, Philip J and Titarenko, Sofya},\n" +
"booktitle={Developments in X-Ray Tomography VII},\n" +
"volume={7804},\n" +
"pages={78040Z},\n" +
"year={2010},\n" +
"organization={International Society for Optics and Photonics}" +
"}")
cite_info.endnote = \
("%0 Conference Proceedings\n" +
"%T Regularization methods for inverse problems in\n" +
"X-ray tomography\n" +
"%A Titarenko, Valeriy\n" +
"%A Bradley, Robert\n" +
"%A Martin, Christopher\n" +
"%A Withers, Philip J\n" +
"%A Titarenko, Sofya\n" +
"%B Developments in X-Ray Tomography VII\n" +
"%V 7804\n" +
"%P 78040Z\n" +
"%D 2010\n" +
"%I International Society for Optics and Photonics")
cite_info.doi = "doi: 10.1117/12.860260"
return cite_info
def get_citation_information(self):
cite_info = CitationInformation()
cite_info.description = \
("The ring artefact removal algorithm used in this processing \
chain is taken from this work.")
cite_info.bibtex = \
("@article{raven1998numerical,\n" +
"title={Numerical removal of ring artifacts in \
microtomography},\n" +
"author={Raven, Carsten},\n" +
"journal={Review of scientific instruments},\n" +
"volume={69},\n" +
"number={8},\n" +
"pages={2978--2980},\n" +
"year={1998},\n" +
"publisher={AIP Publishing}\n" +
"}")
cite_info.endnote = \
("%0 Journal Article\n" +
"%T Numerical removal of ring artifacts in microtomography\n" +
"%A Raven, Carsten\n" +
"%J Review of scientific instruments\n" +
"%V 69\n" +
"%N 8\n" +
"%P 2978-2980\n" +
"%@ 0034-6748\n" +
"%D 1998\n" +
"%I AIP Publishing")
cite_info.doi = "doi: 10.1063/1.1149043"
return cite_info
def get_citation_information(self):
cite_info = CitationInformation()
cite_info.description = \
("The reconstruction used to create this output is described in " +
"this publication")
cite_info.bibtex = \
("@article{palenstijn2011performance,\n" +
"title={Performance improvements for iterative electron " +
"tomography reconstruction using graphics processing units " +
"(GPUs)},\n" +
"author={Palenstijn, WJ and Batenburg, KJ and Sijbers, J},\n" +
"journal={Journal of structural biology},\n" +
"volume={176},\n" +
"number={2},\n" +
"pages={250--253},\n" +
"year={2011},\n" +
"publisher={Elsevier}\n" +
"}")
cite_info.endnote = \
("%0 Journal Article\n" +
"%T Performance improvements for iterative electron tomography " +
"reconstruction using graphics processing units (GPUs)\n" +
"%A Palenstijn, WJ\n" +
"%A Batenburg, KJ\n" +
"%A Sijbers, J\n" +
"%J Journal of structural biology\n" +
"%V 176\n" +
"%N 2\n" +
"%P 250-253\n" +
"%@ 1047-8477\n" +
"%D 2011\n" +
"%I Elsevier")
cite_info.doi = "http://dx.doi.org/10.1016/j.jsb.2011.07.017"
return cite_info
def get_citation_information(self):
cite_info = CitationInformation()
cite_info.description = \
("The reconstruction used to create this output is described in " +
"this publication")
cite_info.bibtex = \
("@article{palenstijn2011performance,\n" +
"title={Performance improvements for iterative electron " +
"tomography reconstruction using graphics processing units " +
"(GPUs)},\n" +
"author={Palenstijn, WJ and Batenburg, KJ and Sijbers, J},\n" +
"journal={Journal of structural biology},\n" +
"volume={176},\n" +
"number={2},\n" +
"pages={250--253},\n" +
"year={2011},\n" +
"publisher={Elsevier}\n" +
"}")
cite_info.endnote = \
("%0 Journal Article\n" +
"%T Performance improvements for iterative electron tomography " +
"reconstruction using graphics processing units (GPUs)\n" +
"%A Palenstijn, WJ\n" +
"%A Batenburg, KJ\n" +
"%A Sijbers, J\n" +
"%J Journal of structural biology\n" +
"%V 176\n" +
"%N 2\n" +
"%P 250-253\n" +
"%@ 1047-8477\n" +
"%D 2011\n" +
"%I Elsevier")
cite_info.doi = "http://dx.doi.org/10.1016/j.jsb.2011.07.017"
return cite_info
def get_citation_information(self):
cite_info = CitationInformation()
cite_info.description = \
("An algorithm from the TomoPy framework is used to perform the \
reconstruction in this processing pipeline")
cite_info.bibtex = \
("@article{gursoy2014tomopy,\n" +
"title={TomoPy: a framework for the analysis of synchrotron,\n" +
"tomographic data},\n" +
"author={G{\"u}rsoy, Doga and De Carlo, Francesco and Xiao,\n" +
"Xianghui and Jacobsen, Chris},\n" +
"journal={Journal of synchrotron radiation},\n" +
"volume={21},\n" +
"number={5},\n" +
"pages={1188--1193},\n" +
"year={2014},\n" +
"publisher={International Union of Crystallography}\n" +
"}")
cite_info.endnote = \
("%0 Journal Article\n" +
"%T TomoPy: a framework for the analysis of synchrotron\n" +
"tomographic data\n" +
"%A Gursoy, Doga\n" +
"%A De Carlo, Francesco" +
"%A Xiao, Xianghui" +
"%A Jacobsen, Chris" +
"%J Journal of synchrotron radiation" +
"%V 21" +
"%N 5" +
"%P 1188-1193" +
"%@ 1600-5775" +
"%D 2014" +
"%I International Union of Crystallography")
cite_info.doi = "doi: 10.1107/S1600577514013939"
return cite_info
def get_citation_information(self):
cite_info = CitationInformation()
cite_info.description = \
("The center of rotation for this reconstruction was calculated " +
"automatically using the method described in this work")
cite_info.bibtex = \
("@article{vo2014reliable,\n" +
"title={Reliable method for calculating the center of rotation " +
"in parallel-beam tomography},\n" +
"author={Vo, Nghia T and Drakopoulos, Michael and Atwood, " +
"Robert C and Reinhard, Christina},\n" +
"journal={Optics Express},\n" +
"volume={22},\n" +
"number={16},\n" +
"pages={19078--19086},\n" +
"year={2014},\n" +
"publisher={Optical Society of America}\n" +
"}")
cite_info.endnote = \
("%0 Journal Article\n" +
"%T Reliable method for calculating the center of rotation in " +
"parallel-beam tomography\n" +
"%A Vo, Nghia T\n" +
"%A Drakopoulos, Michael\n" +
"%A Atwood, Robert C\n" +
"%A Reinhard, Christina\n" +
"%J Optics Express\n" +
"%V 22\n" +
"%N 16\n" +
"%P 19078-19086\n" +
"%@ 1094-4087\n" +
"%D 2014\n" +
"%I Optical Society of America")
cite_info.doi = "https://doi.org/10.1364/OE.22.019078"
return cite_info
def get_citation_information(self):
cite_info = CitationInformation()
cite_info.description = \
("The Tomographic filtering performed in this processing " +
"chain is derived from this work.")
cite_info.bibtex = \
("@Article{C4CP04488F, \n" +
"author ={Price, S. W. T. and Ignatyev, K. and Geraki, K. and \
Basham, M. and Filik, J. and Vo, N. T. and Witte, P. T. and \
Beale, A. M. and Mosselmans, J. F. W.}, \n" +
"title ={Chemical imaging of single catalyst particles with \
scanning [small mu ]-XANES-CT and [small mu ]-XRF-CT}, \n" +
"journal ={Phys. Chem. Chem. Phys.}, \n" +
"year ={2015}, \n" +
"volume ={17}, \n" +
"issue ={1}, \n" +
"pages ={521-529}, \n" +
"publisher ={The Royal Society of Chemistry}, \n" +
"doi ={10.1039/C4CP04488F}, \n" +
"url ={http://dx.doi.org/10.1039/C4CP04488F}, \n" +
"}")
cite_info.endnote = \
("%0 Journal Article\n" +
"%T Chemical imaging of single catalyst particles with scanning \
[small mu ]-XANES-CT and [small mu ]-XRF-CT\n" +
"%A Price, Stephen W.T.\n" +
"%A Ignatyev, Konstantin\n" +
"%A Geraki, Kalotina\n" +
"%A Basham, Mark\n" +
"%A Filik, Jacob\n" +
"%A Vo, Nghia T.\n" +
"%A Witte, Peter T.\n" +
"%A Beale, Andrew M.\n" +
"%A Mosselmans, J. Fred W.\n" +
"%J Physical Chemistry Chemical Physics\n" +
"%V 17\n" +
"%N 1\n" +
"%P 521-529\n" +
"%@ 1094-4087\n" +
"%D 2015\n" +
"%I Royal Society of Chemistry")
cite_info.doi = "doi: 10.1039/c4cp04488f"
return cite_info
def get_citation_information(self):
cite_info = CitationInformation()
cite_info.description = \
("The Tomographic filtering performed in this processing " +
"chain is derived from this work.")
cite_info.bibtex = \
("@Article{C4CP04488F, \n" +
"author ={Price, S. W. T. and Ignatyev, K. and Geraki, K. and \
Basham, M. and Filik, J. and Vo, N. T. and Witte, P. T. and \
Beale, A. M. and Mosselmans, J. F. W.}, \n" +
"title ={Chemical imaging of single catalyst particles with \
scanning [small mu ]-XANES-CT and [small mu ]-XRF-CT}, \n" +
"journal ={Phys. Chem. Chem. Phys.}, \n" +
"year ={2015}, \n" +
"volume ={17}, \n" +
"issue ={1}, \n" +
"pages ={521-529}, \n" +
"publisher ={The Royal Society of Chemistry}, \n" +
"doi ={10.1039/C4CP04488F}, \n" +
"url ={https://doi.org/10.1039/C4CP04488F}, \n" +
"}")
cite_info.endnote = \
("%0 Journal Article\n" +
"%T Chemical imaging of single catalyst particles with scanning \
[small mu ]-XANES-CT and [small mu ]-XRF-CT\n" +
"%A Price, Stephen W.T.\n" +
"%A Ignatyev, Konstantin\n" +
"%A Geraki, Kalotina\n" +
"%A Basham, Mark\n" +
"%A Filik, Jacob\n" +
"%A Vo, Nghia T.\n" +
"%A Witte, Peter T.\n" +
"%A Beale, Andrew M.\n" +
"%A Mosselmans, J. Fred W.\n" +
"%J Physical Chemistry Chemical Physics\n" +
"%V 17\n" +
"%N 1\n" +
"%P 521-529\n" +
"%@ 1094-4087\n" +
"%D 2015\n" +
"%I Royal Society of Chemistry")
cite_info.doi = "doi: 10.1039/c4cp04488f"
return cite_info
def get_citation_information(self):
cite_info = CitationInformation()
cite_info.description = \
("The distortion correction used in this processing chain is taken\
from this work." )
cite_info.bibtex = \
("@article{Vo:15,\n" +
"title={Radial lens distortion correction with sub-pixel accuracy \
for X-ray micro-tomography},\n" +
"author={Nghia T. Vo and Robert C. Atwood and \
Michael Drakopoulos},\n" +
"journal={Optics. Express},\n" +
"volume={23},\n" +
"number={25},\n" +
"pages={32859--32868},\n" +
"year={2015},\n" +
"publisher={OSA Publishing}" +
"}")
cite_info.doi = "doi: DOI: 10.1364/OE.23.032859"
return cite_info
def get_citation_information(self):
cite_info = CitationInformation()
cite_info.description = \
("The code of ring removal is the implementation of the work of \
Nghia T. Vo et al. taken from algorithm 3,4,5,6 in this paper.")
cite_info.bibtex = \
("@article{Vo:18,\n" +
"title={Superior techniques for eliminating ring artifacts in\
X-ray micro-tomography},\n" +
"author={Nghia T. Vo, Robert C. Atwood,\
and Michael Drakopoulos},\n" +
"journal={Opt. Express},\n" +
"volume={26},\n" +
"number={22},\n" +
"pages={28396--28412},\n" +
"year={2018},\n" +
"publisher={OSA}" +
"}")
cite_info.doi = "doi: DOI: 10.1364/OE.26.028396"
return cite_info
def get_citation_information(self):
cite_info = CitationInformation()
cite_info.description = \
("The code of ring removal is the implementation of the work of \
Sofya Titarenko et al. taken from this paper." )
cite_info.bibtex = \
("@article{TITARENKO20101489,\n" +
"title={An analytical formula for ring artefact suppression in \
X-ray tomography},\n" +
"author={Sofya Titarenko, Philip J. Withers and \
Anatoly Yagola},\n" +
"journal={Applied Mathematics Letters},\n" +
"volume={23},\n" +
"number={12},\n" +
"pages={1489 - 1495},\n" +
"year={2010},\n" +
"publisher={Elsevier}" +
"}")
cite_info.doi = "doi: DOI: 10.1016/j.aml.2010.08.022"
return cite_info
def get_citation_information(self):
cite_info = CitationInformation()
cite_info.description = \
("The code of ring removal is the implementation of the work of \
Nghia T. Vo et al. taken from algorithm 4, 5 in this paper." )
cite_info.bibtex = \
("@article{Vo:18,\n" +
"title={Superior techniques for eliminating ring artifacts in\
X-ray micro-tomography},\n" +
"author={Nghia T. Vo, Robert C. Atwood,\
and Michael Drakopoulos},\n" +
"journal={Opt. Express},\n" +
"volume={26},\n" +
"number={22},\n" +
"pages={28396--28412},\n" +
"year={2018},\n" +
"publisher={OSA}" +
"}")
cite_info.doi = "doi: DOI: 10.1364/OE.26.028396"
return cite_info
def get_citation_information(self):
cite_info = CitationInformation()
cite_info.description = \
("The code of ring removal is the implementation of the work of \
Sofya Titarenko et al. taken from this paper.")
cite_info.bibtex = \
("@article{TITARENKO20101489,\n" +
"title={An analytical formula for ring artefact suppression in \
X-ray tomography},\n" +
"author={Sofya Titarenko, Philip J. Withers and \
Anatoly Yagola},\n" +
"journal={Applied Mathematics Letters},\n" +
"volume={23},\n" +
"number={12},\n" +
"pages={1489 - 1495},\n" +
"year={2010},\n" +
"publisher={Elsevier}" +
"}")
cite_info.doi = "doi: DOI: 10.1016/j.aml.2010.08.022"
return cite_info
def get_citation_information(self):
cite_info = CitationInformation()
cite_info.description = \
("The distortion correction used in this processing chain is taken\
from this work.")
cite_info.bibtex = \
("@article{Vo:15,\n" +
"title={Radial lens distortion correction with sub-pixel accuracy \
for X-ray micro-tomography},\n" +
"author={Nghia T. Vo and Robert C. Atwood and \
Michael Drakopoulos},\n" +
"journal={Optics. Express},\n" +
"volume={23},\n" +
"number={25},\n" +
"pages={32859--32868},\n" +
"year={2015},\n" +
"publisher={OSA Publishing}" +
"}")
cite_info.doi = "doi: DOI: 10.1364/OE.23.032859"
return cite_info
def get_citation_information(self):
cite_info = CitationInformation()
cite_info.description = \
("The Tomographic reconstruction performed in this processing " +
"chain is derived from this work.")
cite_info.bibtex = \
("@book{avinash2001principles,\n" +
" title={Principles of computerized tomographic imaging},\n" +
" author={Kak, Avinash C. and Slaney, Malcolm},\n" +
" year={2001},\n" +
" publisher={Society for Industrial and Applied Mathematics}\n" +
"}")
cite_info.endnote = \
("%0 Book\n" +
"%T Principles of computerized tomographic imaging\n" +
"%A Kak, Avinash C.\n" +
"%A Slaney, Malcolm\n" +
"%@ 089871494X\n" +
"%D 2001\n" +
"%I Society for Industrial and Applied Mathematics")
cite_info.doi = "http://dx.doi.org/10.1137/1.9780898719277"
return cite_info
def get_citation_information(self):
cite_info = CitationInformation()
cite_info.description = \
("The PSF correction used in this plugin is taken\
from this work." )
cite_info.bibtex = ("@inproceedings{10.1117/12.2530324,\n"\
"author = {Nghia T. Vo and Robert C. Atwood "\
"and Michael Drakopoulos},\n"\
"title = {{Preprocessing techniques for removing artifacts in "\
"synchrotron-based tomographic images}},\n"\
"volume = {11113},\n"\
"booktitle = {Developments in X-Ray Tomography XII},\n"\
"editor = {Bert Muller and Ge Wang},\n"\
"organization = {International Society for Optics and Photonics},\n"\
"publisher = {SPIE},\n"\
"pages = {309 -- 328},\n"\
"year = {2019},\n"\
"doi = {10.1117/12.2530324},\n"\
"URL = {https://doi.org/10.1117/12.2530324}\n"\
"}")
cite_info.doi = "doi: DOI: 10.1117/12.2530324"
return cite_info
def get_citation_information(self):
cite_info = CitationInformation()
cite_info.description = \
("The Tomographic reconstruction performed in this processing " +
"chain is derived from this work.")
cite_info.bibtex = \
("@book{avinash2001principles,\n" +
" title={Principles of computerized tomographic imaging},\n" +
" author={Avinash C.. Kak and Slaney, Malcolm},\n" +
" year={2001},\n" +
" publisher={Society for Industrial and Applied Mathematics}\n" +
"}")
cite_info.endnote = \
("%0 Book\n" +
"%T Principles of computerized tomographic imaging\n" +
"%A Avinash C.. Kak\n" +
"%A Slaney, Malcolm\n" +
"%@ 089871494X\n" +
"%D 2001\n" +
"%I Society for Industrial and Applied Mathematics")
cite_info.doi = "http://dx.doi.org/10.1137/1.9780898719277"
return cite_info
def get_citation_information(self):
cite_info1 = CitationInformation()
cite_info1.name = 'citation1'
cite_info1.description = \
("The CCPi-Regularisation toolkit provides a set of variational regularisers (denoisers)\
which can be embedded in a plug-and-play fashion into proximal splitting methods \
for image reconstruction. CCPi-RGL comes with algorithms that can satisfy various \
prior expectations of the reconstructed object, for example being piecewise-constant \
or piecewise-smooth nature." )
cite_info1.bibtex = \
("@article{kazantsev2019,\n" +
"title={CCPi-Regularisation Toolkit for computed tomographic image reconstruction with proximal splitting algorithms \},\n" +
"author={Daniil and Kazantsev, Edoardo and Pasca, \
Martin and Turner, Philip and Withers},\n" +
"journal={Software X},\n" +
"volume={Under revision},\n" +
"number={--},\n" +
"pages={--},\n" +
"year={2019},\n" +
"publisher={Elsevier}\n" +
"}")
cite_info1.endnote = \
("%0 Journal Article\n" +
"%T CCPi-Regularisation Toolkit for computed tomographic image reconstruction with proximal splitting algorithms\n" +
"%A Kazantsev, Daniil\n" +
"%A Pasca, Edoardo\n" +
"%A Turner, Martin\n" +
"%A Withers, Philip\n" +
"%J Software X\n" +
"%V --\n" +
"%N --\n" +
"%P --\n" +
"%@ --\n" +
"%D 2019\n" +
"%I Elsevier\n")
cite_info1.doi = "doi: "
return [cite_info1]
def get_citation_information(self):
cite_info = CitationInformation()
cite_info.name = 'citation3'
cite_info.description = \
("The tomography reconstruction algorithm used in this processing \
pipeline is part of the ASTRA Toolbox" )
cite_info.bibtex = \
("@article{palenstijn2011performance,\n" +
"title={Performance improvements for iterative electron \
tomography reconstruction using graphics processing units \
(GPUs)},\n" +
"author={Palenstijn, WJ and Batenburg, KJ and Sijbers, J},\n" +
"journal={Journal of structural biology},\n" +
"volume={176},\n" +
"number={2},\n" +
"pages={250--253},\n" +
"year={2011},\n" +
"publisher={Elsevier}\n" +
"}")
cite_info.endnote = \
("%0 Journal Article\n" +
"%T Performance improvements for iterative electron tomography \
reconstruction using graphics processing units (GPUs)\n" +
"%A Palenstijn, WJ\n" +
"%A Batenburg, KJ\n" +
"%A Sijbers, J\n" +
"%J Journal of structural biology\n" +
"%V 176\n" +
"%N 2\n" +
"%P 250-253\n" +
"%@ 1047-8477\n" +
"%D 2011\n" +
"%I Elsevier\n")
cite_info.doi = "doi: 10.1016/j.jsb.2011.07.017"
return super(AstraReconGpu, self).get_citation_information() + \
[cite_info]
def get_citation_information(self):
cite_info = CitationInformation()
cite_info.name = 'citation3'
cite_info.description = \
("The tomography reconstruction algorithm used in this processing \
pipeline is part of the ASTRA Toolbox")
cite_info.bibtex = \
("@article{palenstijn2011performance,\n" +
"title={Performance improvements for iterative electron \
tomography reconstruction using graphics processing units \
(GPUs)},\n" +
"author={Palenstijn, WJ and Batenburg, KJ and Sijbers, J},\n" +
"journal={Journal of structural biology},\n" +
"volume={176},\n" +
"number={2},\n" +
"pages={250--253},\n" +
"year={2011},\n" +
"publisher={Elsevier}\n" +
"}")
cite_info.endnote = \
("%0 Journal Article\n" +
"%T Performance improvements for iterative electron tomography \
reconstruction using graphics processing units (GPUs)\n" +
"%A Palenstijn, WJ\n" +
"%A Batenburg, KJ\n" +
"%A Sijbers, J\n" +
"%J Journal of structural biology\n" +
"%V 176\n" +
"%N 2\n" +
"%P 250-253\n" +
"%@ 1047-8477\n" +
"%D 2011\n" +
"%I Elsevier\n")
cite_info.doi = "doi: 10.1016/j.jsb.2011.07.017"
return super(AstraReconGpu, self).get_citation_information() + \
[cite_info]
def get_citation_information(self):
cite_info = CitationInformation()
cite_info.description = \
("The contrast enhancement used in this processing chain is taken\
from this work." )
cite_info.bibtex = \
("@article{paganin2002simultaneous,\n" +
"title={Simultaneous phase and amplitude extraction from a single\
defocused image of a homogeneous object},\n" +
"author={Paganin, David and Mayo, SC and Gureyev, Tim E and \
Miller, Peter R and Wilkins, Steve W},\n" +
"journal={Journal of microscopy},\n" +
"volume={206},\n" +
"number={1},\n" +
"pages={33--40},\n" +
"year={2002},\n" +
"publisher={Wiley Online Library}" +
"}")
cite_info.endnote = \
("%0 Journal Article\n" +
"%T Simultaneous phase and amplitude extraction from a single \
defocused image of a homogeneous object\n" +
"%A Paganin, David\n" +
"%A Mayo, SC\n" +
"%A Gureyev, Tim E\n" +
"%A Miller, Peter R\n" +
"%A Wilkins, Steve W\n" +
"%J Journal of microscopy\n" +
"%V 206\n" +
"%N 1\n" +
"%P 33-40\n" +
"%@ 1365-2818\n" +
"%D 2002\n" +
"%I Wiley Online Library\n")
cite_info.doi = "doi: DOI: 10.1046/j.1365-2818.2002.01010.x"
return cite_info
def get_citation_information(self):
cite_info = CitationInformation()
cite_info.description = \
("The contrast enhancement used in this processing chain is taken\
from this work.")
cite_info.bibtex = \
("@article{paganin2002simultaneous,\n" +
"title={Simultaneous phase and amplitude extraction from a single\
defocused image of a homogeneous object},\n" +
"author={Paganin, David and Mayo, SC and Gureyev, Tim E and \
Miller, Peter R and Wilkins, Steve W},\n" +
"journal={Journal of microscopy},\n" +
"volume={206},\n" +
"number={1},\n" +
"pages={33--40},\n" +
"year={2002},\n" +
"publisher={Wiley Online Library}" +
"}")
cite_info.endnote = \
("%0 Journal Article\n" +
"%T Simultaneous phase and amplitude extraction from a single \
defocused image of a homogeneous object\n" +
"%A Paganin, David\n" +
"%A Mayo, SC\n" +
"%A Gureyev, Tim E\n" +
"%A Miller, Peter R\n" +
"%A Wilkins, Steve W\n" +
"%J Journal of microscopy\n" +
"%V 206\n" +
"%N 1\n" +
"%P 33-40\n" +
"%@ 1365-2818\n" +
"%D 2002\n" +
"%I Wiley Online Library\n")
cite_info.doi = "doi: DOI: 10.1046/j.1365-2818.2002.01010.x"
return cite_info
def get_citation_information(self):
cite_info1 = CitationInformation()
cite_info1.name = 'citation1'
cite_info1.description = \
("The tomography reconstruction algorithm used in this processing \
pipeline is part of the ASTRA Toolbox" )
cite_info1.bibtex = \
("@article{van2016fast,\n" +
"title={Fast and flexible X-ray tomography using the ASTRA \
toolbox},\n" +
"author={van Aarle, Wim and Palenstijn, Willem Jan and Cant, \
Jeroen and Janssens, Eline and Bleichrodt, Folkert and \
Dabravolski, Andrei and De Beenhouwer, Jan and Batenburg, K Joost\
and Sijbers, Jan},\n" +
"journal={Optics Express},\n" +
"volume={24},\n" +
"number={22},\n" +
"pages={25129--25147},\n" +
"year={2016},\n" +
"publisher={Optical Society of America}\n" +
"}")
cite_info1.endnote = \
("%0 Journal Article\n" +
"%T Fast and flexible X-ray tomography using the ASTRA \
toolbox\n" +
"%A van Aarle, Wim\n" +
"%A Palenstijn, Willem Jan\n" +
"%A Cant, Jeroen\n" +
"%A Janssens, Eline\n" +
"%A Bleichrodt, Folkert\n" +
"%A Dabravolski, Andrei\n" +
"%A De Beenhouwer, Jan\n" +
"%A Batenburg, K Joost\n" +
"%A Sijbers, Jan\n" +
"%J Optics Express\n" +
"%V 24\n" +
"%N 22\n" +
"%P 25129-25147\n" +
"%@ 1094-4087\n" +
"%D 2016\n" +
"%I Optical Society of America\n")
cite_info1.doi = "doi: 10.1364/OE.24.025129"
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = \
("The tomography reconstruction algorithm used in this processing \
pipeline is part of the ASTRA Toolbox" )
cite_info2.bibtex = \
("@article{van2015astra,\n" +
"title={The ASTRA Toolbox: A platform for advanced algorithm \
development in electron tomography},\n" +
"author={van Aarle, Wim and Palenstijn, Willem Jan and \
De Beenhouwer, Jan and Altantzis, Thomas and Bals, Sara and \
Batenburg, K Joost and Sijbers, Jan},\n" +
"journal={Ultramicroscopy},\n" +
"volume={157},\n" +
"pages={35--47},\n" +
"year={2015},\n" +
"publisher={Elsevier}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T Numerical removal of ring artifacts in microtomography\n" +
"%A Raven, Carsten\n" +
"%J Review of scientific instruments\n" +
"%V 69\n" +
"%N 8\n" +
"%P 2978-2980\n" +
"%@ 0034-6748\n" +
"%D 1998\n" +
"%I AIP Publishing")
cite_info2.doi = "doi: 10.1364/OE.24.025129"
return [cite_info1, cite_info2]
def get_citation_information(self):
cite_info1 = CitationInformation()
cite_info1.name = 'citation1'
cite_info1.description = \
("The CCPi-Regularisation toolkit provides a set of variational regularisers (denoisers) which can be embedded in a plug-and-play fashion into proximal splitting methods for image reconstruction. CCPi-RGL comes with algorithms that can satisfy various prior expectations of the reconstructed object, for example being piecewise-constant or piecewise-smooth nature.")
cite_info1.bibtex = \
("@article{kazantsev2019,\n" +
"title={CCPi-Regularisation Toolkit for computed tomographic image reconstruction with proximal splitting algorithms},\n" +
"author={Daniil and Kazantsev, Edoardo and Pasca, Martin and Turner, Philip and Withers},\n" +
"journal={Software X},\n" +
"volume={accepted},\n" +
"number={--},\n" +
"pages={--},\n" +
"year={2019},\n" +
"publisher={Elsevier}\n" +
"}")
cite_info1.endnote = \
("%0 Journal Article\n" +
"%T CCPi-Regularisation Toolkit for computed tomographic image reconstruction with proximal splitting algorithms\n" +
"%A Kazantsev, Daniil\n" +
"%A Pasca, Edoardo\n" +
"%A Turner, Martin\n" +
"%A Withers, Philip\n" +
"%J Software X\n" +
"%V --\n" +
"%N --\n" +
"%P --\n" +
"%@ --\n" +
"%D 2019\n" +
"%I Elsevier\n")
cite_info1.doi = "doi: "
if (self.parameters['method'] == 'ROF_TV'):
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = ("Rudin-Osher-Fatemi explicit PDE minimisation method for smoothed Total Variation regulariser")
cite_info2.bibtex = \
("@article{ROF1992,\n" +
"title={Nonlinear total variation based noise removal algorithms},\n" +
"author={L. Rudin, S. Osher, E. Fatemi},\n" +
"journal={Physica D.},\n" +
"volume={60},\n" +
"number={},\n" +
"pages={259--268},\n" +
"year={1992},\n" +
"publisher={Elsevier}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T Nonlinear total variation based noise removal algorithms\n" +
"%A Rudin, L.\n" +
"%A Osher, S.\n" +
"%A Fatemi, Fatemi\n" +
"%J Physica D.\n" +
"%V 60\n" +
"%N \n" +
"%P 259--268\n" +
"%@ \n" +
"%D 1992\n" +
"%I Elsevier\n")
cite_info2.doi = "doi: 10.1016/0167-2789(92)90242-F"
if (self.parameters['method'] == 'FGP_TV'):
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = ("Fast-Gradient-Projection algorithm for Total Variation regulariser")
cite_info2.bibtex = \
("@article{FGP2009,\n" +
"title={Fast gradient-based algorithms for constrained total variation image denoising and deblurring problems},\n" +
"author={Amir and Beck, Mark and Teboulle},\n" +
"journal={IEEE Transactions on Image Processing},\n" +
"volume={18},\n" +
"number={11},\n" +
"pages={2419--2434},\n" +
"year={2009},\n" +
"publisher={IEEE}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T Fast gradient-based algorithms for constrained total variation image denoising and deblurring problems\n" +
"%A Beck, Amir\n" +
"%A Teboulle, Mark.\n" +
"%J IEEE Transactions on Image Processing\n" +
"%V 18\n" +
"%N 11\n" +
"%P 2419--2434\n" +
"%@ \n" +
"%D 2009\n" +
"%I IEEE\n")
cite_info2.doi = "doi: 10.1109/TIP.2009.2028250"
if (self.parameters['method'] == 'SB_TV'):
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = ("The Split Bregman approach for Total Variation regulariser")
cite_info2.bibtex = \
("@article{SBTV2009,\n" +
"title={The split Bregman method for L1-regularized problems},\n" +
"author={Tom and Goldstein, Stanley and Osher},\n" +
"journal={SIAM journal on imaging sciences},\n" +
"volume={2},\n" +
"number={2},\n" +
"pages={323--343},\n" +
"year={2009},\n" +
"publisher={SIAM}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T The split Bregman method for L1-regularized problems\n" +
"%A Goldstein, Tom\n" +
"%A Osher, Stanley.\n" +
"%J SIAM journal on imaging sciences\n" +
"%V 2\n" +
"%N 2\n" +
"%P 323--343\n" +
"%@ \n" +
"%D 2009\n" +
"%I SIAM\n")
cite_info2.doi = "doi: 10.1137/080725891"
if (self.parameters['method'] == 'TGV'):
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = ("Total generalized variation regulariser for piecewise-smooth recovery")
cite_info2.bibtex = \
("@article{TGV2010,\n" +
"title={Total generalized variation},\n" +
"author={Kristian and Bredies, Karl and Kunisch, Thomas and Pock},\n" +
"journal={SIAM journal on imaging sciences},\n" +
"volume={3},\n" +
"number={3},\n" +
"pages={492--526},\n" +
"year={2010},\n" +
"publisher={SIAM}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T Total generalized variation\n" +
"%A Bredies, Kristian\n" +
"%A Kunisch, Kurl.\n" +
"%A Pock, Thomas.\n" +
"%J SIAM journal on imaging sciences\n" +
"%V 3\n" +
"%N 3\n" +
"%P 492--526\n" +
"%@ \n" +
"%D 2010\n" +
"%I SIAM\n")
cite_info2.doi = "doi: 10.1137/080725891"
if (self.parameters['method'] == 'LLT_ROF'):
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = ("Combination for ROF model and LLT for piecewise-smooth recovery")
cite_info2.bibtex = \
("@article{ROFLLT2017,\n" +
"title={Model-based iterative reconstruction using higher-order regularization of dynamic synchrotron data},\n" +
"author={Daniil and Kazantsev, Enyu and Guo, Andre and Phillion, Philip and Withers, Peter and Lee},\n" +
"journal={Measurement Science and Technology},\n" +
"volume={28},\n" +
"number={9},\n" +
"pages={094004},\n" +
"year={2017},\n" +
"publisher={IoP}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T Model-based iterative reconstruction using higher-order regularization of dynamic synchrotron data\n" +
"%A Kazantsev, Daniil\n" +
"%A Enyu, Guo.\n" +
"%A Phillion, Andre.\n" +
"%A Withers, Philip.\n" +
"%A Lee, Peter.\n" +
"%J Measurement Science and Technology\n" +
"%V 28\n" +
"%N 9\n" +
"%P 094004\n" +
"%@ \n" +
"%D 2017\n" +
"%I IoP\n")
cite_info2.doi = "doi: 10.1088/1361-6501"
if (self.parameters['method'] == 'NDF'):
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = ("Nonlinear or linear duffison as a regulariser ")
cite_info2.bibtex = \
("@article{NDF1990,\n" +
"title={Scale-space and edge detection using anisotropic diffusion},\n" +
"author={Pietro and Perona, Jitendra and Malik},\n" +
"journal={IEEE Transactions on pattern analysis and machine intelligence},\n" +
"volume={12},\n" +
"number={7},\n" +
"pages={629--639},\n" +
"year={1990},\n" +
"publisher={IEEE}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T Scale-space and edge detection using anisotropic diffusion\n" +
"%A Pietro, Perona\n" +
"%A Jitendra, Malik.\n" +
"%J IEEE Transactions on pattern analysis and machine intelligence\n" +
"%V 12\n" +
"%N 7\n" +
"%P 629--639\n" +
"%@ \n" +
"%D 1990\n" +
"%I IEEE\n")
cite_info2.doi = "doi: 10.1109/34.56205"
if (self.parameters['method'] == 'DIFF4th'):
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = ("Anisotropic diffusion of higher order for piecewise-smooth recovery")
cite_info2.bibtex = \
("@article{ADF2011,\n" +
"title={An anisotropic fourth-order diffusion filter for image noise removal},\n" +
"author={Mohammad Reza and Hajiaboli},\n" +
"journal={International Journal of Computer Vision},\n" +
"volume={92},\n" +
"number={2},\n" +
"pages={177--191},\n" +
"year={2011},\n" +
"publisher={Springer}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T Anisotropic diffusion of higher order for piecewise-smooth recovery\n" +
"%A Mohammad Reza, Hajiaboli\n" +
"%J International Journal of Computer Vision\n" +
"%V 92\n" +
"%N 2\n" +
"%P 177--191\n" +
"%@ \n" +
"%D 2011\n" +
"%I Springer\n")
cite_info2.doi = "doi: 10.1007/s11263-010-0330-1"
return [cite_info1, cite_info2]
def get_citation_information(self):
cite_info1 = CitationInformation()
cite_info1.name = 'citation1'
cite_info1.description = \
("The tomography reconstruction algorithm used in this processing \
pipeline is part of the ASTRA Toolbox")
cite_info1.bibtex = \
("@article{van2016fast,\n" +
"title={Fast and flexible X-ray tomography using the ASTRA \
toolbox},\n" +
"author={van Aarle, Wim and Palenstijn, Willem Jan and Cant, \
Jeroen and Janssens, Eline and Bleichrodt, Folkert and \
Dabravolski, Andrei and De Beenhouwer, Jan and Batenburg, K Joost\
and Sijbers, Jan},\n" +
"journal={Optics Express},\n" +
"volume={24},\n" +
"number={22},\n" +
"pages={25129--25147},\n" +
"year={2016},\n" +
"publisher={Optical Society of America}\n" +
"}")
cite_info1.endnote = \
("%0 Journal Article\n" +
"%T Fast and flexible X-ray tomography using the ASTRA \
toolbox\n" +
"%A van Aarle, Wim\n" +
"%A Palenstijn, Willem Jan\n" +
"%A Cant, Jeroen\n" +
"%A Janssens, Eline\n" +
"%A Bleichrodt, Folkert\n" +
"%A Dabravolski, Andrei\n" +
"%A De Beenhouwer, Jan\n" +
"%A Batenburg, K Joost\n" +
"%A Sijbers, Jan\n" +
"%J Optics Express\n" +
"%V 24\n" +
"%N 22\n" +
"%P 25129-25147\n" +
"%@ 1094-4087\n" +
"%D 2016\n" +
"%I Optical Society of America\n")
cite_info1.doi = "doi: 10.1364/OE.24.025129"
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = \
("The tomography reconstruction algorithm used in this processing \
pipeline is part of the ASTRA Toolbox")
cite_info2.bibtex = \
("@article{van2015astra,\n" +
"title={The ASTRA Toolbox: A platform for advanced algorithm \
development in electron tomography},\n" +
"author={van Aarle, Wim and Palenstijn, Willem Jan and \
De Beenhouwer, Jan and Altantzis, Thomas and Bals, Sara and \
Batenburg, K Joost and Sijbers, Jan},\n" +
"journal={Ultramicroscopy},\n" +
"volume={157},\n" +
"pages={35--47},\n" +
"year={2015},\n" +
"publisher={Elsevier}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T Numerical removal of ring artifacts in microtomography\n" +
"%A Raven, Carsten\n" +
"%J Review of scientific instruments\n" +
"%V 69\n" +
"%N 8\n" +
"%P 2978-2980\n" +
"%@ 0034-6748\n" +
"%D 1998\n" +
"%I AIP Publishing")
cite_info2.doi = "doi: 10.1364/OE.24.025129"
return [cite_info1, cite_info2]
def get_citation_information(self):
cite_info1 = CitationInformation()
cite_info1.name = 'citation1'
cite_info1.description = \
("The CCPi-Regularisation toolkit provides a set of variational regularisers (denoisers) which can be embedded in a plug-and-play fashion into proximal splitting methods for image reconstruction. CCPi-RGL comes with algorithms that can satisfy various prior expectations of the reconstructed object, for example being piecewise-constant or piecewise-smooth nature.")
cite_info1.bibtex = \
("@article{kazantsev2019,\n" +
"title={CCPi-Regularisation Toolkit for computed tomographic image reconstruction with proximal splitting algorithms},\n" +
"author={Daniil and Kazantsev, Edoardo and Pasca, Martin and Turner, Philip and Withers},\n" +
"journal={Software X},\n" +
"volume={9},\n" +
"number={},\n" +
"pages={317-323},\n" +
"year={2019},\n" +
"publisher={Elsevier}\n" +
"}")
cite_info1.endnote = \
("%0 Journal Article\n" +
"%T CCPi-Regularisation Toolkit for computed tomographic image reconstruction with proximal splitting algorithms\n" +
"%A Kazantsev, Daniil\n" +
"%A Pasca, Edoardo\n" +
"%A Turner, Martin\n" +
"%A Withers, Philip\n" +
"%J Software X\n" +
"%V 9\n" +
"%N \n" +
"%P 317--323\n" +
"%@ --\n" +
"%D 2019\n" +
"%I Elsevier\n")
cite_info1.doi = "doi: 10.1016/j.softx.2019.04.003"
if (self.parameters['method'] == 'ROF_TV'):
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = (
"Rudin-Osher-Fatemi explicit PDE minimisation method for smoothed Total Variation regulariser"
)
cite_info2.bibtex = \
("@article{ROF1992,\n" +
"title={Nonlinear total variation based noise removal algorithms},\n" +
"author={L. Rudin, S. Osher, E. Fatemi},\n" +
"journal={Physica D.},\n" +
"volume={60},\n" +
"number={},\n" +
"pages={259--268},\n" +
"year={1992},\n" +
"publisher={Elsevier}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T Nonlinear total variation based noise removal algorithms\n" +
"%A Rudin, L.\n" +
"%A Osher, S.\n" +
"%A Fatemi, Fatemi\n" +
"%J Physica D.\n" +
"%V 60\n" +
"%N \n" +
"%P 259--268\n" +
"%@ \n" +
"%D 1992\n" +
"%I Elsevier\n")
cite_info2.doi = "doi: 10.1016/0167-2789(92)90242-F"
if (self.parameters['method'] == 'FGP_TV'):
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = (
"Fast-Gradient-Projection algorithm for Total Variation regulariser"
)
cite_info2.bibtex = \
("@article{FGP2009,\n" +
"title={Fast gradient-based algorithms for constrained total variation image denoising and deblurring problems},\n" +
"author={Amir and Beck, Mark and Teboulle},\n" +
"journal={IEEE Transactions on Image Processing},\n" +
"volume={18},\n" +
"number={11},\n" +
"pages={2419--2434},\n" +
"year={2009},\n" +
"publisher={IEEE}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T Fast gradient-based algorithms for constrained total variation image denoising and deblurring problems\n" +
"%A Beck, Amir\n" +
"%A Teboulle, Mark.\n" +
"%J IEEE Transactions on Image Processing\n" +
"%V 18\n" +
"%N 11\n" +
"%P 2419--2434\n" +
"%@ \n" +
"%D 2009\n" +
"%I IEEE\n")
cite_info2.doi = "doi: 10.1109/TIP.2009.2028250"
if (self.parameters['method'] == 'SB_TV'):
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = (
"The Split Bregman approach for Total Variation regulariser")
cite_info2.bibtex = \
("@article{SBTV2009,\n" +
"title={The split Bregman method for L1-regularized problems},\n" +
"author={Tom and Goldstein, Stanley and Osher},\n" +
"journal={SIAM journal on imaging sciences},\n" +
"volume={2},\n" +
"number={2},\n" +
"pages={323--343},\n" +
"year={2009},\n" +
"publisher={SIAM}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T The split Bregman method for L1-regularized problems\n" +
"%A Goldstein, Tom\n" +
"%A Osher, Stanley.\n" +
"%J SIAM journal on imaging sciences\n" +
"%V 2\n" +
"%N 2\n" +
"%P 323--343\n" +
"%@ \n" +
"%D 2009\n" +
"%I SIAM\n")
cite_info2.doi = "doi: 10.1137/080725891"
if (self.parameters['method'] == 'TGV'):
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = (
"Total generalized variation regulariser for piecewise-smooth recovery"
)
cite_info2.bibtex = \
("@article{TGV2010,\n" +
"title={Total generalized variation},\n" +
"author={Kristian and Bredies, Karl and Kunisch, Thomas and Pock},\n" +
"journal={SIAM journal on imaging sciences},\n" +
"volume={3},\n" +
"number={3},\n" +
"pages={492--526},\n" +
"year={2010},\n" +
"publisher={SIAM}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T Total generalized variation\n" +
"%A Bredies, Kristian\n" +
"%A Kunisch, Kurl.\n" +
"%A Pock, Thomas.\n" +
"%J SIAM journal on imaging sciences\n" +
"%V 3\n" +
"%N 3\n" +
"%P 492--526\n" +
"%@ \n" +
"%D 2010\n" +
"%I SIAM\n")
cite_info2.doi = "doi: 10.1137/080725891"
if (self.parameters['method'] == 'LLT_ROF'):
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = (
"Combination for ROF model and LLT for piecewise-smooth recovery"
)
cite_info2.bibtex = \
("@article{ROFLLT2017,\n" +
"title={Model-based iterative reconstruction using higher-order regularization of dynamic synchrotron data},\n" +
"author={Daniil and Kazantsev, Enyu and Guo, Andre and Phillion, Philip and Withers, Peter and Lee},\n" +
"journal={Measurement Science and Technology},\n" +
"volume={28},\n" +
"number={9},\n" +
"pages={094004},\n" +
"year={2017},\n" +
"publisher={IoP}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T Model-based iterative reconstruction using higher-order regularization of dynamic synchrotron data\n" +
"%A Kazantsev, Daniil\n" +
"%A Enyu, Guo.\n" +
"%A Phillion, Andre.\n" +
"%A Withers, Philip.\n" +
"%A Lee, Peter.\n" +
"%J Measurement Science and Technology\n" +
"%V 28\n" +
"%N 9\n" +
"%P 094004\n" +
"%@ \n" +
"%D 2017\n" +
"%I IoP\n")
cite_info2.doi = "doi: 10.1088/1361-6501"
if (self.parameters['method'] == 'NDF'):
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = (
"Nonlinear or linear duffison as a regulariser ")
cite_info2.bibtex = \
("@article{NDF1990,\n" +
"title={Scale-space and edge detection using anisotropic diffusion},\n" +
"author={Pietro and Perona, Jitendra and Malik},\n" +
"journal={IEEE Transactions on pattern analysis and machine intelligence},\n" +
"volume={12},\n" +
"number={7},\n" +
"pages={629--639},\n" +
"year={1990},\n" +
"publisher={IEEE}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T Scale-space and edge detection using anisotropic diffusion\n" +
"%A Pietro, Perona\n" +
"%A Jitendra, Malik.\n" +
"%J IEEE Transactions on pattern analysis and machine intelligence\n" +
"%V 12\n" +
"%N 7\n" +
"%P 629--639\n" +
"%@ \n" +
"%D 1990\n" +
"%I IEEE\n")
cite_info2.doi = "doi: 10.1109/34.56205"
if (self.parameters['method'] == 'DIFF4th'):
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = (
"Anisotropic diffusion of higher order for piecewise-smooth recovery"
)
cite_info2.bibtex = \
("@article{ADF2011,\n" +
"title={An anisotropic fourth-order diffusion filter for image noise removal},\n" +
"author={Mohammad Reza and Hajiaboli},\n" +
"journal={International Journal of Computer Vision},\n" +
"volume={92},\n" +
"number={2},\n" +
"pages={177--191},\n" +
"year={2011},\n" +
"publisher={Springer}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T Anisotropic diffusion of higher order for piecewise-smooth recovery\n" +
"%A Mohammad Reza, Hajiaboli\n" +
"%J International Journal of Computer Vision\n" +
"%V 92\n" +
"%N 2\n" +
"%P 177--191\n" +
"%@ \n" +
"%D 2011\n" +
"%I Springer\n")
cite_info2.doi = "doi: 10.1007/s11263-010-0330-1"
if (self.parameters['method'] == 'NLTV'):
cite_info2 = CitationInformation()
cite_info2.name = 'citation2'
cite_info2.description = (
"Nonlocal discrete regularization on weighted graphs: a framework for image and manifold processing"
)
cite_info2.bibtex = \
("@article{abd2008,\n" +
"title={Nonlocal discrete regularization on weighted graphs: a framework for image and manifold processing},\n" +
"author={Abderrahim and Lezoray and Bougleux},\n" +
"journal={IEEE Trans. Image Processing},\n" +
"volume={17},\n" +
"number={7},\n" +
"pages={1047--1060},\n" +
"year={2008},\n" +
"publisher={IEEE}\n" +
"}")
cite_info2.endnote = \
("%0 Journal Article\n" +
"%T Nonlocal discrete regularization on weighted graphs: a framework for image and manifold processing\n" +
"%A Abderrahim, Lezoray, Bougleux\n" +
"%J IEEE Trans. Image Processing\n" +
"%V 17\n" +
"%N 7\n" +
"%P 1047--1060\n" +
"%@ \n" +
"%D 2008\n" +
"%I IEEE\n")
cite_info2.doi = "doi: 10.1109/TIP.2008.924284"
return [cite_info1, cite_info2]